debug statements

Author: CaroAMN

modules/local/numorph3dunet/main.nf

@@ -25,6 +25,12 @@ process NUMORPH3DUNET {
     source /opt/conda/etc/profile.d/conda.sh
     conda activate 3dunet
 
+    echo "GPU devices:"
+    ls -lha /dev/nvidia* || echo "No nvidia devices found"
+    echo "CUDA_VISIBLE_DEVICES: \$CUDA_VISIBLE_DEVICES"
+    echo "Checking GPU access:"
+    nvidia-smi || echo "No nvidia-smi found"
+
     mkdir -p ./results
     mkdir -p ./images
 

modules/local/numorph3dunet/tests/main.nf.test

@@ -8,7 +8,7 @@ nextflow_process {
     tag "modules_"
     tag "numorph3dunet"
     tag "gpu"
-    profile "docker,gpu"
+    //profile "docker,gpu"
 
     config './nextflow.config'