diff --git a/modules/nf-core/mlst/tests/main.nf.test b/modules/nf-core/mlst/tests/main.nf.test
index 057445958915..977de1040e79 100644
--- a/modules/nf-core/mlst/tests/main.nf.test
+++ b/modules/nf-core/mlst/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
             process {
                 """
                 input[0] = [ [ id:'test', single_end:false ], // meta map
-                             file("https://raw.githubusercontent.com/nf-core/test-datasets/bactmap/genome/NCTC13799.fna", checkIfExists: true)
+                             file(params.modules_testdata_base_path + "genomics/prokaryotes/bacteroides_fragilis/genome/genome.fna.gz", checkIfExists: true)
                            ]
                 """
             }
diff --git a/modules/nf-core/mlst/tests/main.nf.test.snap b/modules/nf-core/mlst/tests/main.nf.test.snap
index 1a33133783ea..e5b3ea94b6ea 100644
--- a/modules/nf-core/mlst/tests/main.nf.test.snap
+++ b/modules/nf-core/mlst/tests/main.nf.test.snap
@@ -8,7 +8,7 @@
                             "id": "test",
                             "single_end": false
                         },
-                        "test.tsv:md5,b52df6178834a156c9402012718eb65e"
+                        "test.tsv:md5,c500a2c893c5cbfe6eaae0ce2287b2e6"
                     ]
                 ],
                 "1": [
@@ -20,7 +20,7 @@
                             "id": "test",
                             "single_end": false
                         },
-                        "test.tsv:md5,b52df6178834a156c9402012718eb65e"
+                        "test.tsv:md5,c500a2c893c5cbfe6eaae0ce2287b2e6"
                     ]
                 ],
                 "versions": [
@@ -28,6 +28,10 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-18T03:41:42.858668172"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.6"
+        },
+        "timestamp": "2025-05-01T22:45:29.959115768"
     }
 }
\ No newline at end of file