nanostring/subworkflows/local/normalize/tests/main.nf.test at 1d32c77f4053c88d130a2f5606faf4d837a9cf50 · nf-core/nanostring · GitHub

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nextflow_workflow {

    name "Test Subworkflow NORMALIZE"
    script "../main.nf"
    workflow "NORMALIZE"

    test("test profile") {
        when {
            workflow {
                """
                // Input 0: counts channel with meta and RCC files
                input[0] = Channel.of([
                    [ id: 'test_sample' ], // meta map
                    [
                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_01_01.RCC', checkIfExists: true),
                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_02_02.RCC', checkIfExists: true),
                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_03_03.RCC', checkIfExists: true),
                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_04_04.RCC', checkIfExists: true)
                    ]
                ])

                // Input 1: samplesheet channel with meta and file
                input[1] = Channel.of([
                    [ id: 'test_samplesheet' ], // meta map
                    file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/samplesheets/samplesheet_test.csv', checkIfExists: true)
                ])
                """
            }
        }

        then {
            assertAll(
                { assert workflow.success},
                { assert snapshot(workflow.out).match() }
            )
        }
    }
}