Skip to content

Commit d87931e

Browse files
atrigilaatrigila
committed
test: update snapshot
1 parent 89da5e0 commit d87931e

File tree

1 file changed

+142
-0
lines changed

1 file changed

+142
-0
lines changed

‎tests/default.nf.test.snap‎

Lines changed: 142 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,142 @@
1+
{
2+
"-profile test": {
3+
"content": [
4+
7,
5+
{
6+
"CREATE_ANNOTATED_TABLES": {
7+
"r-base": "4.3.3",
8+
"r-ggplot2": null,
9+
"r-dplyr": "1.1.4",
10+
"r-readr": "2.1.5"
11+
},
12+
"CREATE_GENE_HEATMAP": {
13+
"r-base": "4.2.3",
14+
"r-dplyr": "1.1.4",
15+
"r-ggplot2": "3.4.4",
16+
"r-rlang": "1.1.1",
17+
"bioconductor-ComplexHeatmap": "2.14.0",
18+
"r-circlize": "0.4.15",
19+
"r-yaml": "2.3.8",
20+
"r-fs": "1.6.4"
21+
},
22+
"NACHO_NORMALIZE": {
23+
"r-base": "4.3.3",
24+
"r-nacho": "2.0.6",
25+
"r-dplyr": "1.1.4",
26+
"r-ggplot2": "3.4.4",
27+
"r-tidyr": "1.3.0",
28+
"r-readr": "2.1.5",
29+
"r-fs": "1.6.4",
30+
"r-optparse": "1.7.5"
31+
},
32+
"NACHO_QC": {
33+
"r-base": "4.3.3",
34+
"r-nacho": "2.0.6",
35+
"r-dplyr": "1.1.4",
36+
"r-ggplot2": "3.4.4",
37+
"r-tidyr": "1.3.0",
38+
"r-readr": "2.1.5",
39+
"r-fs": "1.6.4",
40+
"r-optparse": "1.7.5"
41+
},
42+
"Workflow": {
43+
"nf-core/nanostring": "v1.4.0dev"
44+
}
45+
},
46+
[
47+
"QC",
48+
"QC/NACHO",
49+
"QC/NACHO/NanoQC.html",
50+
"QC/NACHO/NanoQC_with_outliers.html",
51+
"QC/NACHO/hk_detected_mqc.txt",
52+
"QC/NACHO/normalized_qc_mqc.txt",
53+
"QC/NACHO/png",
54+
"QC/NACHO/png/AVG_vs_BD_mqc.png",
55+
"QC/NACHO/png/AVG_vs_MED_mqc.png",
56+
"QC/NACHO/png/BD_mqc.png",
57+
"QC/NACHO/png/FOV_mqc.png",
58+
"QC/NACHO/png/HKF_mqc.png",
59+
"QC/NACHO/png/HK_mqc.png",
60+
"QC/NACHO/png/LOD_mqc.png",
61+
"QC/NACHO/png/Neg_mqc.png",
62+
"QC/NACHO/png/PCA1_vs_PCA2_mqc.png",
63+
"QC/NACHO/png/PCA_mqc.png",
64+
"QC/NACHO/png/PCAi_mqc.png",
65+
"QC/NACHO/png/POSF_vs_NEGF_mqc.png",
66+
"QC/NACHO/png/Pos_mqc.png",
67+
"QC/NACHO/png/Pos_vs_neg_mqc.png",
68+
"QC/NACHO/png/Posctrl_linearity_mqc.png",
69+
"QC/NACHO/png/plot_normf_mqc.png",
70+
"annotated_tables",
71+
"annotated_tables/counts_Norm_GEX_ENDO.tsv",
72+
"annotated_tables/counts_Norm_GEX_HK.tsv",
73+
"annotated_tables/counts_wo_HKnorm_Norm_GEX_ENDO.tsv",
74+
"annotated_tables/counts_wo_HKnorm_Norm_GEX_HK.tsv",
75+
"gene_heatmaps",
76+
"gene_heatmaps/gene_heatmap_mqc.png",
77+
"gene_heatmaps/wo_HKnorm_gene_heatmap_mqc.png",
78+
"multiqc",
79+
"multiqc/multiqc_data",
80+
"multiqc/multiqc_data/multiqc.log",
81+
"multiqc/multiqc_data/multiqc_No_HK_Norm_GEX_ENDO.txt",
82+
"multiqc/multiqc_data/multiqc_No_HK_Norm_GEX_HK.txt",
83+
"multiqc/multiqc_data/multiqc_Norm_GEX_ENDO.txt",
84+
"multiqc/multiqc_data/multiqc_Norm_GEX_HK.txt",
85+
"multiqc/multiqc_data/multiqc_citations.txt",
86+
"multiqc/multiqc_data/multiqc_data.json",
87+
"multiqc/multiqc_data/multiqc_normalized_qc.txt",
88+
"multiqc/multiqc_data/multiqc_software_versions.txt",
89+
"multiqc/multiqc_data/multiqc_sources.txt",
90+
"multiqc/multiqc_plots",
91+
"multiqc/multiqc_plots/pdf",
92+
"multiqc/multiqc_plots/pdf/No_HK_Norm_GEX_ENDO.pdf",
93+
"multiqc/multiqc_plots/pdf/No_HK_Norm_GEX_HK.pdf",
94+
"multiqc/multiqc_plots/pdf/Norm_GEX_ENDO.pdf",
95+
"multiqc/multiqc_plots/pdf/Norm_GEX_HK.pdf",
96+
"multiqc/multiqc_plots/pdf/normalized_qc.pdf",
97+
"multiqc/multiqc_plots/png",
98+
"multiqc/multiqc_plots/png/No_HK_Norm_GEX_ENDO.png",
99+
"multiqc/multiqc_plots/png/No_HK_Norm_GEX_HK.png",
100+
"multiqc/multiqc_plots/png/Norm_GEX_ENDO.png",
101+
"multiqc/multiqc_plots/png/Norm_GEX_HK.png",
102+
"multiqc/multiqc_plots/png/normalized_qc.png",
103+
"multiqc/multiqc_plots/svg",
104+
"multiqc/multiqc_plots/svg/No_HK_Norm_GEX_ENDO.svg",
105+
"multiqc/multiqc_plots/svg/No_HK_Norm_GEX_HK.svg",
106+
"multiqc/multiqc_plots/svg/Norm_GEX_ENDO.svg",
107+
"multiqc/multiqc_plots/svg/Norm_GEX_HK.svg",
108+
"multiqc/multiqc_plots/svg/normalized_qc.svg",
109+
"multiqc/multiqc_report.html",
110+
"normalized_counts",
111+
"normalized_counts/normalized_counts.tsv",
112+
"normalized_counts/normalized_counts_wo_HKnorm.tsv",
113+
"pipeline_info",
114+
"pipeline_info/nf_core_nanostring_software_mqc_versions.yml"
115+
],
116+
[
117+
"hk_detected_mqc.txt:md5,61209383acc2abf6fc3ea309b5a5e094",
118+
"normalized_qc_mqc.txt:md5,9a0b015a28094a17331b12b08898da8e",
119+
"AVG_vs_BD_mqc.png:md5,06ba42cbbbbbfebd04cdcc1e609f5945",
120+
"AVG_vs_MED_mqc.png:md5,783d2149574bd725e595e1fadeb84927",
121+
"HKF_mqc.png:md5,a21a91e53904e74a81da92eff0260816",
122+
"PCA1_vs_PCA2_mqc.png:md5,a07d944ed0ed85f814143eebcf8ae507",
123+
"PCA_mqc.png:md5,8e4456b730ab72f0dcd5ed1895660df8",
124+
"PCAi_mqc.png:md5,2338d5fe0e447fc74d4969725546c136",
125+
"POSF_vs_NEGF_mqc.png:md5,0e1b5105e68a6e0c51471afce218abdb",
126+
"plot_normf_mqc.png:md5,6ffd3c11f8f5ddfbd3715e1780b10b01",
127+
"multiqc_No_HK_Norm_GEX_ENDO.txt:md5,e2519ba9b3305506903ec7a5ab129273",
128+
"multiqc_No_HK_Norm_GEX_HK.txt:md5,7e0c5b707084b96c8c9971b370efedda",
129+
"multiqc_Norm_GEX_ENDO.txt:md5,e19c84ecced09ae16080bab597cf38d6",
130+
"multiqc_Norm_GEX_HK.txt:md5,1741444283470be6edcc00cae0b66935",
131+
"multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
132+
"multiqc_normalized_qc.txt:md5,44a0350c527fe8735fc6b419536a78f5",
133+
"multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490"
134+
]
135+
],
136+
"meta": {
137+
"nf-test": "0.9.2",
138+
"nextflow": "25.04.6"
139+
},
140+
"timestamp": "2025-08-27T15:44:12.804371583"
141+
}
142+
}

0 commit comments

Comments
 (0)