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1 parent 52142f8 commit a4fb9c2Copy full SHA for a4fb9c2
1 file changed
workflows/pairgenomealign.nf
@@ -90,7 +90,7 @@ workflow PAIRGENOMEALIGN {
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ch_targetgenome_gzi = [[],[]]
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ch_targetgenome_dic = [[],[]]
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- if (params.export_aln_to.contains('cram') |params.export_aln_to.contains('bam')) {
+ if (params.export_aln_to.contains('cram') | params.export_aln_to.contains('bam')) {
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FASTA_BGZIP_INDEX_DICT_SAMTOOLS( ch_targetgenome )
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ch_targetgenome_faz = FASTA_BGZIP_INDEX_DICT_SAMTOOLS.out.fasta_gz
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ch_targetgenome_fai = FASTA_BGZIP_INDEX_DICT_SAMTOOLS.out.fai
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