Description of feature
Both strands of the target genome are indexed; this increases speed at the expense of memory usage. In addition, as a side effect it allows the target sequences' strand to be - instead of always + in the alignments, which some tools do not support. For that reason it would be good to make that feature optional. At the moment the only option for the user is change the LASTDB options via withName: 'ALIGNMENT_LASTDB' in a configuration file.
Description of feature
Both strands of the target genome are indexed; this increases speed at the expense of memory usage. In addition, as a side effect it allows the target sequences' strand to be
-instead of always+in the alignments, which some tools do not support. For that reason it would be good to make that feature optional. At the moment the only option for the user is change the LASTDB options viawithName: 'ALIGNMENT_LASTDB'in a configuration file.