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1 parent 24afeb8 commit cc03b83Copy full SHA for cc03b83
workflows/phaseimpute/main.nf
@@ -36,11 +36,6 @@ include { VCF_CONCATENATE_BCFTOOLS as CONCAT_PANEL } from '../../subworkflows/
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include { BCFTOOLS_STATS as BCFTOOLS_STATS_PANEL } from '../../modules/nf-core/bcftools/stats'
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include { chunkPrepareChannel } from './function.nf'
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-//Target phasing
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-
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-include { VCF_PHASE_SHAPEIT5 as VCF_PHASE_TARGET } from '../../subworkflows/local/vcf_phase_shapeit5'
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-include { VCF_CHUNK_GLIMPSE as TARGET_CHUNK } from '../../subworkflows/local/vcf_chunk_glimpse'
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// Imputation
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include { LISTTOFILE } from '../../modules/local/listtofile'
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include { BCFTOOLS_QUERY as BCFTOOLS_QUERY_IMPUTED } from '../../modules/nf-core/bcftools/query'
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