Remove vulnerable PR-comment artifact pattern - #61
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 4.0.2. For more documentation on how to update your pipeline, please see the Synchronisation documentation. |
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FriederikeHanssen
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Jul 24, 2026
erikrikarddaniel
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Jul 28, 2026
Resolves .nf-core.yml conflict between master's PR-comment security hotfix (#61, ignore entries for the hand-patched workflow files) and dev's newer 4.0.3 template sync / 2.1.0 version bump: keep the union of both branches' lint-ignore entries and dev's newer version fields. Verified clean with `nf-core pipelines lint --release`.
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Security patch
This PR applies a security fix included in nf-core/tools 4.0.3 for a potential exploit in the GitHub Actions workflows that post comments on pull requests.
For details, see the related security advisory: https://nf-co.re/advisories/pr-comment-workflow-vulnerability
The fix must be merged into the default branch to take effect. Please merge this PR as soon as possible.
These changes only affect CI workflows, so merging them into the default branch does not require a new pipeline release.