awstest.yml

name: nf-core AWS test
# This workflow can be triggered manually with the GitHub actions workflow dispatch button.
# It runs the -profile 'test' on AWS batch

on:
  workflow_dispatch:
jobs:
  run-platform:
    name: Run AWS tests
    if: github.repository == 'nf-core/pixelator'
    runs-on: ubuntu-latest
    steps:
      # Launch workflow using Seqera Platform CLI tool action
      - name: Launch workflow via Seqera Platform
        uses: seqeralabs/action-tower-launch@51565b514bff1827cf34620de25d0055759f1fc9 # v2
        with:
          workspace_id: ${{ vars.TOWER_WORKSPACE_ID }}
          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
          compute_env: ${{ vars.TOWER_COMPUTE_ENV }}
          revision: ${{ github.sha }}
          workdir: s3://${{ vars.AWS_S3_BUCKET }}/work/pixelator/work-${{ github.sha }}
          parameters: |
            {
              "outdir": "s3://${{ vars.AWS_S3_BUCKET }}/pixelator/results-test-${{ github.sha }}"
            }
          profiles: test

      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7
        with:
          name: Seqera Platform debug log file
          path: |
            tower_action_*.log
            tower_action_*.json