diff --git a/CHANGELOG.md b/CHANGELOG.md
index b686d6aab..576818dcd 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -123,6 +123,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Fix inconsistent sample column order in Sentieon SNV family VCF by sorting per-sample VCFs by filename before merging, consistent with DeepVariant and MT paths [#908](https://github.com/nf-core/raredisease/pull/908)
 - Fix intermittent `CALL_SNV_DEEPVARIANT - wgs` test failure caused by non-deterministic GLnexus quality scores by replacing `variantsMD5` with `vcf.summary` [#850](https://github.com/nf-core/raredisease/pull/850)
 - Fix swapped `run_mt_for_wes`/`skip_split_multiallelics` arguments in the `CALL_SNV` call, which disabled multiallelic splitting (and inverted MT-for-WES) when `--run_mt_for_wes` was set [#854](https://github.com/nf-core/raredisease/issues/854)
+- `multiqc_config.yml` to include all lanes per read direction in the General Statistics section.
 
 ### Parameters
 
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index d76c55b48..1159fcad4 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -83,14 +83,21 @@ table_columns_placement:
   gatk_contamination:
     contamination_pct: 900
 
+fn_clean_sample_names: true
+
+fn_clean_exts:
+  - ".gz"
+  - ".fastq"
+  - ".tsv"
+  - ".txt"
+  - ".bam"
+
 extra_fn_clean_exts:
   - "_sorted_md"
   - "_contamination"
   - "_pileups"
   - "_mosdepth"
   - "_sorted"
-  - type: regex
-    pattern: "_LNUMBER[0-9]{1,}"
 
 table_sample_merge:
   "(R1)": "_1"