Merge pull request #815 from nf-core/fix-fusion-report

Fusionreport Fixes (Cosmic etc pp)

Author: apeltzer

.nf-core.yml

@@ -16,4 +16,4 @@ template:
   name: rnafusion
   org: nf-core
   outdir: .
-  version: 4.1.2
+  version: 4.1.3dev

CHANGELOG.md

@@ -3,6 +3,14 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v4.1.3dev - [2026-05-28]
+
+### Added
+
+### Fixed
+
+- Fixed issues with FusionReport and COSMIC [#797](https://github.com/nf-core/rnafusion/issues/797)
+
 ## v4.1.2 - [2026-05-20]
 
 ### Added

assets/multiqc_config.yml

@@ -1,5 +1,5 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/rnafusion/releases/tag/4.1.2" target="_blank">nf-core/rnafusion</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnafusion/4.1.2/docs/output" target="_blank">documentation</a>.
+  This report has been generated by the <a href="https://github.com/nf-core/rnafusion/tree/dev" target="_blank">nf-core/rnafusion</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnafusion/dev/docs/output" target="_blank">documentation</a>.
 
 report_section_order:
   nf-core-rnafusion-methods-description:

modules.json

@@ -75,12 +75,12 @@
                     },
                     "fusionreport/detect": {
                         "branch": "master",
-                        "git_sha": "2737fcc61a0379e6f130de9069cadf77bc8e97ff",
+                        "git_sha": "6ed53ffdb0d6be9a34de52b9472693397994e6d0",
                         "installed_by": ["modules"]
                     },
                     "fusionreport/download": {
                         "branch": "master",
-                        "git_sha": "df4b662dae05afb695a4326fc172178b5a7a48ce",
+                        "git_sha": "b871d05e5c8aab73132a41ede89c40910726df74",
                         "installed_by": ["modules"]
                     },
                     "gatk4/bedtointervallist": {