Join mismatch for the following entries: `fa and fai`

[atrigila]

WARN: Skipping COSMIC DB download from `FUSIONREPORT_DOWNLOAD` and skip using it in `FUSIONREPORT`
Uploading local `bin` scripts folder to s3://redacted/bin
Monitor the execution with Seqera Platform using this URL: https://redacted
Join mismatch for the following entries:
- key=[id:Homo_sapiens_GRCh38_46_dna_primary_assembly.fa] values=
- key=[id:Homo_sapiens_GRCh38_46_dna_primary_assembly.fa.fai] values=
-[nf-core/rnafusion] Pipeline completed with errors-
WARN: Unable to upload nextflow out file: nf-dbvWHYOOca7e0.txt — reason: Thread was interrupted
WARN: Unable to upload nextflow log file: nf-dbvWHYOOca7e0.log — reason: Thread was interrupted
WARN: Unable to upload nextflow timeline file: timeline-dbvWHYOOca7e0.html — reason: Thread was interrupted
WARN: Unable to upload tower reprts file: nf-dbvWHYOOca7e0-reports.tsv — reason: Thread was interrupted
ERROR ~ Pipeline failed. Please refer to troubleshooting docs for common issues: https://nf-co.re/docs/running/troubleshooting
-- Check 'nf-dbvWHYOOca7e0.log' file for details
WARN: Failed to render execution report -- see the log file for details
WARN: Failed to render execution timeline -- see the log file for details

Thats it I'm afraid :-(

Originally posted by @apeltzer in #803 (comment)

[atrigila]

@grst
Could you please try this fix:

        ch_fai = channel.fromPath(params.fai).map { that -> [[id:that.Name.replaceFirst(/\.fai$/, '')], that] }

in this line

rnafusion/subworkflows/local/build_references/main.nf

Line 60 in fd48176

ch_fai = channel.fromPath(params.fai).map { that -> [[id:that.Name], that] }

[grst]

That did the trick. Opened a PR with your suggested change.

Unfortunately, I'm already running into another issue with fusioninspector, but I'll follow up on that separately.

[apeltzer]

Fixed in #806