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Remove vendored nf-core utils subworkflows, use plugin imports #952

Remove vendored nf-core utils subworkflows, use plugin imports

Remove vendored nf-core utils subworkflows, use plugin imports #952

Triggered via pull request June 17, 2026 07:31
Status Cancelled
Total duration 3m 15s
Artifacts

nf-test.yml

on: pull_request
nf-test-changes
16s
nf-test-changes
Matrix: nf-test
confirm-pass
6s
confirm-pass
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86 errors and 11 warnings
singularity | 25.10.4 | 1/7
Canceling since a higher priority waiting request for Run nf-test-241 exists
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docker | 25.10.4 | 2/7
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confirm-pass
Process completed with exit code 1.
Run nf-test
Canceling since a higher priority waiting request for Run nf-test-241 exists
singularity | 25.10.4 | 1/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 25.10.4 | 2/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 3/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 1/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 25.10.4 | 5/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 25.10.4 | 3/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 25.10.4 | 6/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 6/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 7/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | latest-everything | 4/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
singularity | 25.10.4 | 4/7
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/