seqkit over seqfu when 2 are in the same bundle

maxulysse · maxulysse · commit 8ea45f0087fc · 2026-06-12T17:10:42.000+02:00
diff --git a/subworkflows/local/utils_nfcore_seqinspector_pipeline/main.nf b/subworkflows/local/utils_nfcore_seqinspector_pipeline/main.nf
@@ -394,7 +394,6 @@ def defineToolsList(input_bundle, input_tools, input_skip) {
         tools_list << 'fastqc'
         tools_list << 'fastqscreen'
         tools_list << 'seqkit_stats'
-        tools_list << 'seqfu_stats'
         tools_list << 'sequali'
         tools_list << 'toulligqc'
     }

Original file line number	Diff line number	Diff line change
`@@ -394,7 +394,6 @@ def defineToolsList(input_bundle, input_tools, input_skip) {`
`394`	`394`	`tools_list << 'fastqc'`
`395`	`395`	`tools_list << 'fastqscreen'`
`396`	`396`	`tools_list << 'seqkit_stats'`
`397`		`- tools_list << 'seqfu_stats'`
`398`	`397`	`tools_list << 'sequali'`
`399`	`398`	`tools_list << 'toulligqc'`
`400`	`399`	`}`