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[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
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Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

View abandoned dependencies (3)

[!NOTE]
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

Datasource	Package	Last Updated
github-actions	JasonEtco/build-and-tag-action	2022-12-21
npm	fast-diff	2023-05-19
npm	husky	2024-11-18

Pending Branch Automerge

The following updates await pending status checks before automerging. To abort the branch automerge and create a PR instead, click on a checkbox below.

• Update GitHub Actions to v6.0.3

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

• Update dependency @actions/cache to v6.0.1
• Update dependency fs-extra to v11.3.5
• Update dependency lint-staged to v17
• Lock file maintenance
• Click on this checkbox to rebase all open PRs at once

Detected Dependencies

github-actions (2)

.github/workflows/main.yml (5)

• actions/checkout v6.0.2@de0fac2e4500dabe0009e67214ff5f5447ce83dd → [Updates: v6.0.3]
• actions/setup-node v6.4.0@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e
• actions/setup-java v5.2.0@be666c2fcd27ec809703dec50e508c2fdc7f6654
• nf-core/setup-nextflow v3.0.0@b4ec1bc7c16a94435159de94a05253542fddf6ef
• node 24

.github/workflows/publish.yml (4)

• actions/checkout v6.0.2@de0fac2e4500dabe0009e67214ff5f5447ce83dd → [Updates: v6.0.3]
• actions/setup-node v6.4.0@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e
• JasonEtco/build-and-tag-action v2@dd5e4991048c325f6d85b4155e586fc211c644da
• node 24

npm (1)

package.json (11)

• @actions/cache ^6.0.0 → [Updates: ^6.0.0]
• @actions/core ^3.0.1
• @actions/exec ^3.0.0
• @actions/io ^3.0.2
• @actions/tool-cache ^4.0.0
• fast-diff ^1.3.0
• fs-extra ^11.3.4 → [Updates: ^11.3.4]
• @vercel/ncc 0.38.4
• husky 9.1.7
• lint-staged 16.4.0 → [Updates: 17.0.7]
• prettier 3.8.3

renovate-config (1)

.github/renovate.json5

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• Check this box to trigger a request for Renovate to run again on this repository