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Regulatory

This folder contains resources developed by the regulatory working group at the nf-core hackathon October 2025 in Barcelona.

The goal was to collate pipeline metrics that are relevant for pipeline risk assessment in a regulatory context.

We developed the following components:

additional pipeline metrics (integrated into the main dlt data loading pipeline, not in this folder)
script to dump selected pipeline metrics into a json object (get_stats.py)
quarto reports summarizing metrics of a specific pipeline in a PDF document

Get stats

To dump a current snapshot of the stats into a json object, follow these steps:

Obtain a motherduck token. The database is stored in the nf-core motherduck instance. You need a token with read permissions. Export it to the MOTHERDUCK_TOKEN env variable.
Execute the python script with
```
uv run get_stats.py
```