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phaseimpute_lint.md

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Nextflow lint results

  • Generated: 2026-03-18T00:25:51.462660288Z
  • Nextflow version: 26.02.0-edge
  • Summary: 4 warnings

⚠️ Warnings

  • Warning: modules/nf-core/stitch/main.nf:52:9: Variable was declared but not used

        def rsync_version_cmd    = rdata ? "rsync: \$(rsync --version | head -n1 | sed 's/^rsync  version //; s/ .*\$//')" : ""
        ^^^^^^^^^^^^^^^^^

  • Warning: modules/nf-core/stitch/main.nf:86:9: Variable was declared but not used

        def rsync_version_cmd  = rdata ? "rsync: \$(rsync --version | head -n1 | sed 's/^rsync  version //; s/ .*\$//')" : ""
        ^^^^^^^^^^^^^^^^^

  • Warning: workflows/phaseimpute/main.nf:238:63: Parameter was not used -- prefix with _ to suppress warning

                    VCF_NORMALIZE_BCFTOOLS.out.vcf_tbi.map{ meta, vcf, index -> [meta, [], []]}, // No scaffold
                                                              ^^^

  • Warning: workflows/phaseimpute/main.nf:238:68: Parameter was not used -- prefix with _ to suppress warning

                    VCF_NORMALIZE_BCFTOOLS.out.vcf_tbi.map{ meta, vcf, index -> [meta, [], []]}, // No scaffold
                                                                   ^^^^^