strict-syntax-health/lint_results/prints-help-results/rangeland_help.txt at main · nf-core/strict-syntax-health · GitHub

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$ NXF_SYNTAX_PARSER=v2 nextflow run . --help


 N E X T F L O W   ~  version 25.12.0-edge

Downloading plugin nf-schema@2.5.1
Launching `./main.nf` [extravagant_miescher]revision: 7def382fb9

WARN: Unrecognized config option 'validation.defaultIgnoreParams'
WARN: Unrecognized config option 'validation.monochromeLogs'

------------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/rangeland 1.1.0dev
------------------------------------------------------
Typical pipeline command:

  nextflow run nf-core/rangeland -profile <docker/singularity/.../institute> --input samplesheet.csv --outdir <OUTDIR>

help message of that parameter will be printed.
or `--helpFull`.

Input/output options
  --input                       [string] Root directory or tarball of all satellite imagery.
  --dem                         [string] Digital elevation model.
  --wvdb                        [string] Water vapor dataset.
  --aod                         [string] Custom Aerosol Optical Depth data.
  --data_cube                   [string] Datacube definition.
  --aoi                         [string] Area of interest.
  --endmember                   [string] Endmember definition.
  --coreg                       [string] Coregistration data for Sentinel 2 inputs.
  --outdir                      [string] The output directory where the results will be saved. You have to use absolute paths to storage on
Cloud infrastructure.
  --email                       [string] Email address for completion summary.
  --multiqc_title               [string] MultiQC report title. Printed as page header, used for filename if not otherwise specified.

Remote sensing image options
  --start_date                  [string]  First day of interest. [default: 1940-01-01]
  --end_date                    [string]  Last day of interest. [default: 2099-12-31]
  --resolution                  [integer] Spatial resolution applied in analyses. [default: 30]

Higher level processing modification
  --sensors_level2              [string] Satellites for which data should be incorporated into higher level processing. [default: LND04
LND05 LND07]
  --indexes                     [string] Select which bands and indexes should be considered in time series analyses. [default: NDVI BLUE
GREEN RED NIR SWIR1 SWIR2]

Visualization
  --mosaic_visualization        [boolean] Whether mosaic visualization should be returned. [default: true]
  --pyramid_visualization       [boolean] Whether pyramid visualization should be returned. [default: true]

Workflow configuration
  --save_ard                    [boolean] Whether analysis ready data should be published to the output directory.
  --save_tsa                    [boolean] Whether the results of time series analyses should be published to the output directory.
  --group_size                  [integer] Batch size of tiles considered for merging. [default: 100]
  --publish_dir_enabled         [boolean] Publish pipeline outputs. [default: true]

Generic options
  --multiqc_methods_description [string]          Custom MultiQC yaml file containing HTML including a methods description.
  --help                        [boolean, string] Display the help message.
  --help_full                   [boolean]         Display the full detailed help message.
  --show_hidden                 [boolean]         Display hidden parameters in the help message (only works when --help or --help_full are provided).

 !! Hiding 18 param(s), use the `--showHidden` parameter to show them !!
------------------------------------------------------

* The pipeline
    https://doi.org/10.5281/zenodo.14679189

* The nf-core framework
    https://doi.org/10.1038/s41587-020-0439-x

* Software dependencies
    https://github.com/nf-core/rangeland/blob/master/CITATIONS.md