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Add test data for virusrecom module#2055

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haggaikelisha-ai merged 4 commits into
nf-core:modulesfrom
haggaikelisha-ai:add-virusrecom-test-data
May 18, 2026
Merged

Add test data for virusrecom module#2055
haggaikelisha-ai merged 4 commits into
nf-core:modulesfrom
haggaikelisha-ai:add-virusrecom-test-data

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@haggaikelisha-ai

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Add test alignment FASTA and mapping file for virusrecom nf-core module.

Files added:

  • data/genomics/sarscov2/genome/virusrecom/test_real_alignment.fasta
  • data/genomics/sarscov2/genome/virusrecom/test_real_mapping.txt

These files are subsetted from the virusrecom example data (12 sequences, 1000bp each) for use in the nf-core/modules virusrecom module test.

Related PR: nf-core/modules#11658

@Joon-Klaps

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Given that it's tool specific, I would add it to delete_me/virus_recom & Simplify the file names to alignment.fasta & mapping.txt

@Joon-Klaps

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After reviewing the module, it might be good to also add the iwic files.
query_recombinant_site_WIC.csv

@Joon-Klaps

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Feel free to merge if you are also happy :D

@haggaikelisha-ai haggaikelisha-ai merged commit b6e80f9 into nf-core:modules May 18, 2026
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2 participants