Add new datasets for the new pipeline structure#2105
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Jun 17, 2026
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piplus2
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| sample,single_cell,spatial,ground_truth | ||
| test1,https://github.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_sc.h5ad,https://github.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_sp.h5ad,https://github.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_gt.csv | ||
| sample,single_cell,spatial | ||
| test1,https://raw.githubusercontent.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_sc.h5ad,https://raw.githubusercontent.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_sp.h5ad |
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| test1,https://raw.githubusercontent.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_sc.h5ad,https://raw.githubusercontent.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_sp.h5ad | |
| test1,https://raw.githubusercontent.com/nf-core/test-datasets/scspatialmap/datasets/sc/min_sc.h5ad,https://raw.githubusercontent.com/nf-core/test-datasets/scspatialmap/datasets/sc/min_sp.h5ad |
| @@ -0,0 +1,2 @@ | |||
| sample,spatial | |||
| test1,https://raw.githubusercontent.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_spatial.h5ad | |||
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| test1,https://raw.githubusercontent.com/nf-core/test-datasets/raw/refs/heads/scspatialmap/datasets/sc/min_spatial.h5ad | |
| test1,https://raw.githubusercontent.com/nf-core/test-datasets/scspatialmap/datasets/sc/min_spatial.h5ad |
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Thank you very much for your help |
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This PR adds updated minimal test datasets for the
scspatialmappipeline to align with the new pipeline structure.