Update the list of mammalian genomes use in the full test suite. - #2224
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charles-plessy merged 2 commits intoAug 25, 2026
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Aug 19, 2026
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- Include the RefSeq assemblies benchmaked in Myers et al., 2025 (https://doi.org/10.1093/bioadv/vbaf238)
- Add prefix indicating median divergence time in the TimeTree database, so that alphanumeric order reflects phylogenetic distance.
- Remove a couple of assemblies that did not add much information.
- Add non-primate outgroups.
- Include the RefSeq assemblies benchmaked in Myers et al., 2025 https://doi.org/10.1093/bioadv/vbaf238 - Add prefix indicating median divergence time in the TimeTree database, so that alphanumeric order reflect phylogenetic distance. - Remove a couple of assemblies that did not add much information. - Add non-primate outgroups.
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This goes with nf-core/test-datasets#2224 The target/query roles of the human genome assemblies GRCh38 and T2T-CHM13v2.0 is reversed in order to better compare with a published benchmark at <https://doi.org/10.1093/bioadv/vbaf238>.
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atrigila
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Nice to have: a README for the files available in this repository and how they were obtained.
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I added the README, can you check it? |
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