Description of the bug
When employing the most recent artic version (artic 1.9.0), the software expects amplicon primer bed files to have 7 columns, including the sequence in the last column. Therefore, the collapse_primer_bed.py script should be adapted to this.
System information
Nextflow version: 25.04.6
Executor: slurm
Container engine: singularity (version 3.7.1-5.1.ohpc.2.1)
Version of nf-core/viralrecon: 3.0.0.
Description of the bug
When employing the most recent artic version (artic 1.9.0), the software expects amplicon primer bed files to have 7 columns, including the sequence in the last column. Therefore, the collapse_primer_bed.py script should be adapted to this.
System information
Nextflow version: 25.04.6
Executor: slurm
Container engine: singularity (version 3.7.1-5.1.ohpc.2.1)
Version of nf-core/viralrecon: 3.0.0.