Skip to content

Commit 164dfdb

Browse files
committed
[automated] Update json files
1 parent f091a9d commit 164dfdb

2 files changed

Lines changed: 90 additions & 32 deletions

File tree

public/components.json

Lines changed: 62 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -65535,7 +65535,7 @@
6553565535
{
6553665536
"name": "cnaqc",
6553765537
"path": "modules/nf-core/cnaqc/meta.yml",
65538-
"tree_sha": "061ce1bd7406784dc0aec985a0c4f1746be3afc8",
65538+
"tree_sha": "12bff3af59bcd88b87b6984a175fb8eedf4030c5",
6553965539
"files": [
6554065540
"modules/nf-core/cnaqc/environment.yml",
6554165541
"modules/nf-core/cnaqc/main.nf",
@@ -65708,6 +65708,64 @@
6570865708
}
6570965709
]
6571065710
],
65711+
"qc_by_chr_rds": [
65712+
[
65713+
{
65714+
"meta": {
65715+
"type": "map",
65716+
"description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', tumour_sample:'tumour_sample1_name' ]`\n"
65717+
}
65718+
},
65719+
{
65720+
"*_qc_by_chr.rds": {
65721+
"type": "file",
65722+
"description": "R object containing results of the quality control by chromosomes for the sample",
65723+
"patten": "*{_qc_by_chr.rds}",
65724+
"ontologies": []
65725+
}
65726+
}
65727+
]
65728+
],
65729+
"plot_qc_by_chr": [
65730+
[
65731+
{
65732+
"meta": {
65733+
"type": "map",
65734+
"description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', tumour_sample:'tumour_sample1_name' ]`\n"
65735+
}
65736+
},
65737+
{
65738+
"*_qc_by_chr_plot.rds": {
65739+
"type": "file",
65740+
"description": "R object containing plots of the quality control results by chromosomes for the sample",
65741+
"patten": "*{_qc_by_chr_plot.rds}",
65742+
"ontologies": []
65743+
}
65744+
}
65745+
]
65746+
],
65747+
"plot_pdf_qc_by_chr": [
65748+
[
65749+
{
65750+
"meta": {
65751+
"type": "map",
65752+
"description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', tumour_sample:'tumour_sample1_name' ]`\n"
65753+
}
65754+
},
65755+
{
65756+
"*_qc_by_chr.pdf": {
65757+
"type": "file",
65758+
"description": "plots of the quality control results by chromosomes for the sample",
65759+
"patten": "*{_qc_by_chr.pdf}",
65760+
"ontologies": [
65761+
{
65762+
"edam": "http://edamontology.org/format_3508"
65763+
}
65764+
]
65765+
}
65766+
}
65767+
]
65768+
],
6571165769
"versions": [
6571265770
{
6571365771
"versions.yml": {
@@ -65736,7 +65794,7 @@
6573665794
"@vvvirgy"
6573765795
]
6573865796
},
65739-
"git_sha": "2080397432fcb0d079121dbacf22ce42ef175cec",
65797+
"git_sha": "0041db49284f44eaeba5b861acdb7d076771d244",
6574065798
"pipelines": [
6574165799
{
6574265800
"name": "tumourevo",
@@ -416155,6 +416213,6 @@
416155416213
"git_sha": "9edc097c4904d60808b5c4c9978934e091aded1a"
416156416214
}
416157416215
],
416158-
"commit_sha": "d1b9e85e27384110d29e3e178540516990c49886",
416159-
"updated_at": "2026-08-06T14:55:33.041Z"
416216+
"commit_sha": "0041db49284f44eaeba5b861acdb7d076771d244",
416217+
"updated_at": "2026-08-07T03:07:53.230Z"
416160416218
}

public/pipelines.json

Lines changed: 28 additions & 28 deletions
Original file line numberDiff line numberDiff line change
@@ -9557,10 +9557,10 @@
95579557
"fork": false,
95589558
"url": "https://api.github.com/repos/nf-core/datasync",
95599559
"created_at": "2024-02-26T10:30:52Z",
9560-
"updated_at": "2026-08-05T15:08:46Z",
9561-
"pushed_at": "2026-08-05T15:05:22Z",
9560+
"updated_at": "2026-08-06T14:56:57Z",
9561+
"pushed_at": "2026-08-06T14:55:56Z",
95629562
"homepage": "https://nf-co.re/datasync",
9563-
"size": 1155,
9563+
"size": 1175,
95649564
"stargazers_count": 10,
95659565
"watchers_count": 10,
95669566
"language": "Nextflow",
@@ -9573,7 +9573,7 @@
95739573
"forks_count": 8,
95749574
"archived": false,
95759575
"disabled": false,
9576-
"open_issues_count": 6,
9576+
"open_issues_count": 3,
95779577
"allow_forking": true,
95789578
"is_template": false,
95799579
"web_commit_signoff_required": false,
@@ -9582,7 +9582,7 @@
95829582
"topics": [],
95839583
"visibility": "public",
95849584
"forks": 8,
9585-
"open_issues": 6,
9585+
"open_issues": 3,
95869586
"watchers": 10,
95879587
"default_branch": "dev",
95889588
"temp_clone_token": "",
@@ -9653,7 +9653,7 @@
96539653
"dev_branch_protection_enforce_admins": false,
96549654
"TEMPLATE_branch_exists": true,
96559655
"has_required_topics": true,
9656-
"open_pr_count": 1,
9656+
"open_pr_count": 0,
96579657
"repository_url": "https://github.com/nf-core/datasync",
96589658
"contributors": [
96599659
{
@@ -9668,7 +9668,7 @@
96689668
},
96699669
{
96709670
"name": "atrigila",
9671-
"count": 33,
9671+
"count": 49,
96729672
"avatar_url": "https://avatars.githubusercontent.com/u/18577080?v=4"
96739673
},
96749674
{
@@ -9688,7 +9688,7 @@
96889688
}
96899689
],
96909690
"released_after_tools": false,
9691-
"head_sha": "71440e4a4b517b516ab5b5775a4ce89d5cedb5fb",
9691+
"head_sha": "fd1034908a4f837b6515e556eb27315a72672b3a",
96929692
"last_release_is_head": false,
96939693
"last_release_vs_default_compare_url": "",
96949694
"commits_to_dev": 30,
@@ -9712,8 +9712,8 @@
97129712
"releases": [
97139713
{
97149714
"tag_name": "dev",
9715-
"published_at": "2026-08-05T15:05:21Z",
9716-
"tag_sha": "71440e4a4b517b516ab5b5775a4ce89d5cedb5fb",
9715+
"published_at": "2026-08-06T14:55:56Z",
9716+
"tag_sha": "fd1034908a4f837b6515e556eb27315a72672b3a",
97179717
"has_schema": true,
97189718
"doc_files": [
97199719
"docs/output.md",
@@ -9733,7 +9733,7 @@
97339733
]
97349734
},
97359735
"nextflow_version": "!>=25.10.4",
9736-
"nf_core_version": "4.0.3",
9736+
"nf_core_version": "4.1.0",
97379737
"plugins": [
97389738
"nf-validation@1.1.3"
97399739
],
@@ -17972,7 +17972,7 @@
1797217972
"forks_count": 5,
1797317973
"archived": false,
1797417974
"disabled": false,
17975-
"open_issues_count": 14,
17975+
"open_issues_count": 15,
1797617976
"allow_forking": true,
1797717977
"is_template": false,
1797817978
"web_commit_signoff_required": false,
@@ -17981,7 +17981,7 @@
1798117981
"topics": [],
1798217982
"visibility": "public",
1798317983
"forks": 5,
17984-
"open_issues": 14,
17984+
"open_issues": 15,
1798517985
"watchers": 2,
1798617986
"default_branch": "dev",
1798717987
"temp_clone_token": "",
@@ -19897,7 +19897,7 @@
1989719897
"updated_at": "2026-08-06T14:14:55Z",
1989819898
"pushed_at": "2026-08-06T14:08:51Z",
1989919899
"homepage": "https://nf-co.re/genomeqc",
19900-
"size": 7215,
19900+
"size": 7216,
1990119901
"stargazers_count": 24,
1990219902
"watchers_count": 24,
1990319903
"language": "Nextflow",
@@ -37479,7 +37479,7 @@
3747937479
"fork": false,
3748037480
"url": "https://api.github.com/repos/nf-core/pathogensurveillance",
3748137481
"created_at": "2023-01-12T17:57:12Z",
37482-
"updated_at": "2026-08-04T00:08:00Z",
37482+
"updated_at": "2026-08-06T16:34:45Z",
3748337483
"pushed_at": "2026-07-27T19:56:25Z",
3748437484
"homepage": "https://nf-co.re/pathogensurveillance",
3748537485
"size": 299052,
@@ -37495,7 +37495,7 @@
3749537495
"forks_count": 9,
3749637496
"archived": false,
3749737497
"disabled": false,
37498-
"open_issues_count": 47,
37498+
"open_issues_count": 46,
3749937499
"allow_forking": true,
3750037500
"is_template": false,
3750137501
"web_commit_signoff_required": false,
@@ -37507,7 +37507,7 @@
3750737507
],
3750837508
"visibility": "public",
3750937509
"forks": 9,
37510-
"open_issues": 47,
37510+
"open_issues": 46,
3751137511
"watchers": 62,
3751237512
"default_branch": "master",
3751337513
"temp_clone_token": "",
@@ -42416,7 +42416,7 @@
4241642416
"updated_at": "2026-07-28T14:03:08Z",
4241742417
"pushed_at": "2026-08-06T14:07:55Z",
4241842418
"homepage": "https://nf-co.re/raredisease",
42419-
"size": 200655,
42419+
"size": 200684,
4242042420
"stargazers_count": 122,
4242142421
"watchers_count": 122,
4242242422
"language": "Nextflow",
@@ -45849,9 +45849,9 @@
4584945849
"url": "https://api.github.com/repos/nf-core/riboseq",
4585045850
"created_at": "2023-10-18T00:45:36Z",
4585145851
"updated_at": "2026-08-05T19:16:35Z",
45852-
"pushed_at": "2026-08-06T10:11:58Z",
45852+
"pushed_at": "2026-08-06T21:38:05Z",
4585345853
"homepage": "https://nf-co.re/riboseq",
45854-
"size": 24201,
45854+
"size": 24191,
4585545855
"stargazers_count": 35,
4585645856
"watchers_count": 35,
4585745857
"language": "Nextflow",
@@ -62117,7 +62117,7 @@
6211762117
"forks_count": 23,
6211862118
"archived": false,
6211962119
"disabled": false,
62120-
"open_issues_count": 53,
62120+
"open_issues_count": 54,
6212162121
"allow_forking": true,
6212262122
"is_template": false,
6212362123
"web_commit_signoff_required": false,
@@ -62135,7 +62135,7 @@
6213562135
],
6213662136
"visibility": "public",
6213762137
"forks": 23,
62138-
"open_issues": 53,
62138+
"open_issues": 54,
6213962139
"watchers": 45,
6214062140
"default_branch": "master",
6214162141
"temp_clone_token": "",
@@ -62208,7 +62208,7 @@
6220862208
"dev_uses_ruleset": true,
6220962209
"TEMPLATE_branch_exists": true,
6221062210
"has_required_topics": true,
62211-
"open_pr_count": 7,
62211+
"open_pr_count": 8,
6221262212
"repository_url": "https://github.com/nf-core/spatialaxe",
6221362213
"contributors": [
6221462214
{
@@ -68262,9 +68262,9 @@
6826268262
"url": "https://api.github.com/repos/nf-core/viralrecon",
6826368263
"created_at": "2020-03-30T11:14:12Z",
6826468264
"updated_at": "2026-07-30T14:04:05Z",
68265-
"pushed_at": "2026-08-03T13:04:25Z",
68265+
"pushed_at": "2026-08-06T14:57:29Z",
6826668266
"homepage": "https://nf-co.re/viralrecon",
68267-
"size": 13537,
68267+
"size": 14591,
6826868268
"stargazers_count": 165,
6826968269
"watchers_count": 165,
6827068270
"language": "Nextflow",
@@ -68277,7 +68277,7 @@
6827768277
"forks_count": 156,
6827868278
"archived": false,
6827968279
"disabled": false,
68280-
"open_issues_count": 62,
68280+
"open_issues_count": 63,
6828168281
"allow_forking": true,
6828268282
"is_template": false,
6828368283
"web_commit_signoff_required": false,
@@ -68302,7 +68302,7 @@
6830268302
],
6830368303
"visibility": "public",
6830468304
"forks": 156,
68305-
"open_issues": 62,
68305+
"open_issues": 63,
6830668306
"watchers": 165,
6830768307
"default_branch": "master",
6830868308
"temp_clone_token": "",
@@ -68371,7 +68371,7 @@
6837168371
"dev_branch_protection_enforce_admins": false,
6837268372
"TEMPLATE_branch_exists": true,
6837368373
"has_required_topics": true,
68374-
"open_pr_count": 4,
68374+
"open_pr_count": 5,
6837568375
"repository_url": "https://github.com/nf-core/viralrecon",
6837668376
"contributors": [
6837768377
{

0 commit comments

Comments
 (0)