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[automated] Update json files
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Lines changed: 190 additions & 23 deletions

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‎public/components.json‎

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}
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]
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},
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{
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"name": "misopy_index",
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"path": "modules/nf-core/misopy/index/meta.yml",
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"type": "module",
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"meta": {
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"name": "misopy_index",
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"description": "Build an indexed representation of a GFF for efficient retrieval of genes",
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"keywords": [
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"misopy",
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"index",
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"gff",
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"alternative splicing"
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],
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"tools": [
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{
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"misopy": {
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"description": "Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq",
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"homepage": "https://github.com/yarden/MISO",
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"documentation": "https://miso.readthedocs.io/en/fastmiso/",
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"tool_dev_url": "https://github.com/yarden/MISO",
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"doi": "10.1038/nmeth.1528",
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"licence": [
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"GPL v2"
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],
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"identifier": "biotools:misopy"
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}
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}
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],
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"input": [
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[
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{
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"meta": {
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"type": "map",
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"description": "Groovy Map containing genome information\ne.g. `[ id:'genome1' ]`\n"
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}
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},
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{
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"gff3": {
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"type": "file",
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"description": "GFF3 file",
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"pattern": "*.gff3",
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"ontologies": [
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{
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"edam": "http://edamontology.org/format_1965"
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}
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]
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}
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}
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]
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],
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"output": {
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"miso_index": [
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[
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{
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"meta": {
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"type": "map",
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"description": "Groovy Map containing genome information\ne.g. `[ id:'genome1' ]`\n"
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}
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},
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{
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"index": {
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"type": "file",
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"description": "Processed MISO index file",
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"pattern": "*.{shelve}",
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"ontologies": []
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}
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}
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"python": {
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{
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"description": "The expression to obtain the version of the tool"
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}
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}
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],
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"versions_misopy": [
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[
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{
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"${task.process}": {
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"type": "string",
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"description": "The name of the process"
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}
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},
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{
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"misopy": {
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"type": "string",
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"description": "The name of the tool"
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}
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{
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"python -c \"import pkg_resources; print(pkg_resources.get_distribution('misopy').version)\"": {
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"type": "eval",
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"description": "The expression to obtain the version of the tool"
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}
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}
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]
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]
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},
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"topics": {
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"versions": [
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{
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"${task.process}": {
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"python": {
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{
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"misopy": {
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},
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"authors": [
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"@piplus2"
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}
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},
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{
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"name": "mitohifi_findmitoreference",
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"path": "modules/nf-core/mitohifi/findmitoreference/meta.yml",

‎public/pipelines.json‎

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