[automated] Update nf-core/tools API docs for dev

Author: nf-core-bot

sites/docs/src/content/api_reference/dev/api/pipelines/sync.md

@@ -54,10 +54,10 @@ Whether to try to automatically make a PR on GitHub.com
 
 #### `required_config_vars{:python}`
 
-List of nextflow variables required to make template pipeline
+Nextflow config variables required to make template pipeline, keyed by section
 
 - **Type:**
-  list
+  dict
 
 #### `gh_username{:python}`
 

sites/docs/src/content/api_reference/dev/api/utils.md

@@ -10,7 +10,7 @@ Class to provide a single session for interacting with the GitHub API for a run.
 Inherits the requests_cache.CachedSession and adds additional functionality,
 such as automatically setting up GitHub authentication if we can.
 
-#### `get(url, **kwargs){:python}`
+#### `get(url, params=None, **kwargs){:python}`
 
 Initialise the session if we haven’t already, then call the superclass get method.
 
@@ -473,7 +473,7 @@ Validator for file path specified as –singularity-cache-index argument in nf-c
 
 #### `_abc_impl{:python}`_= <\_abc.\_abc_data object>_
 
-#### `validate(value){:python}`
+#### `validate(document) → None{:python}`
 
 Validate the input.
 If invalid, this should raise a `ValidationError`.

sites/docs/src/content/api_reference/dev/module_lint_tests/main_nf.md

@@ -9,6 +9,9 @@ in which case failures will be reported as warnings.
 
 The following checks are performed:
 
+- `main_nf_module_granularity`: The module must represent a single command
+  as `<tool>` or single subcommand with distinct functionality as
+  `<tool/subtool>`.
 - `main_nf_exists`: The `main.nf` file must exist.
 - `deprecated_dsl2`: The file must not contain deprecated DSL2 identifiers
   (`initOptions`, `saveFiles`, `getSoftwareName`, `getProcessName`,