[automated] Update json files

Author: nf-core-bot

public/pipelines.json

@@ -33366,9 +33366,9 @@
             "url": "https://api.github.com/repos/nf-core/oncoanalyser",
             "created_at": "2022-12-22T05:01:49Z",
             "updated_at": "2026-06-07T22:49:35Z",
-            "pushed_at": "2026-06-05T05:40:48Z",
+            "pushed_at": "2026-06-14T23:48:49Z",
             "homepage": "https://nf-co.re/oncoanalyser",
-            "size": 8227,
+            "size": 8228,
             "stargazers_count": 112,
             "watchers_count": 112,
             "language": "Nextflow",
@@ -34815,12 +34815,12 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/pangenome",
             "created_at": "2020-11-08T18:02:43Z",
-            "updated_at": "2026-06-04T09:33:50Z",
+            "updated_at": "2026-06-14T23:08:05Z",
             "pushed_at": "2026-04-30T13:33:51Z",
             "homepage": "https://nf-co.re/pangenome",
             "size": 4530,
-            "stargazers_count": 107,
-            "watchers_count": 107,
+            "stargazers_count": 108,
+            "watchers_count": 108,
             "language": "Nextflow",
             "has_issues": true,
             "has_projects": true,
@@ -34843,7 +34843,7 @@
             "visibility": "public",
             "forks": 22,
             "open_issues": 16,
-            "watchers": 107,
+            "watchers": 108,
             "default_branch": "master",
             "temp_clone_token": "",
             "allow_squash_merge": false,
@@ -40115,7 +40115,7 @@
             "url": "https://api.github.com/repos/nf-core/raredisease",
             "created_at": "2021-06-21T09:40:29Z",
             "updated_at": "2026-05-12T06:11:16Z",
-            "pushed_at": "2026-06-14T09:38:20Z",
+            "pushed_at": "2026-06-14T18:01:43Z",
             "homepage": "https://nf-co.re/raredisease",
             "size": 198213,
             "stargazers_count": 117,
@@ -40127,10 +40127,10 @@
             "has_wiki": false,
             "has_pages": false,
             "has_discussions": false,
-            "forks_count": 67,
+            "forks_count": 68,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 83,
+            "open_issues_count": 85,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -40147,8 +40147,8 @@
                 "wgs"
             ],
             "visibility": "public",
-            "forks": 67,
-            "open_issues": 83,
+            "forks": 68,
+            "open_issues": 85,
             "watchers": 117,
             "default_branch": "master",
             "temp_clone_token": "",
@@ -40190,7 +40190,7 @@
                     "status": "disabled"
                 }
             },
-            "network_count": 67,
+            "network_count": 68,
             "subscribers_count": 156,
             "team_contributors_permission_push": true,
             "team_contributors_permission_admin": false,
@@ -40221,7 +40221,7 @@
             "dev_branch_protection_enforce_admins": false,
             "TEMPLATE_branch_exists": true,
             "has_required_topics": true,
-            "open_pr_count": 16,
+            "open_pr_count": 17,
             "repository_url": "https://github.com/nf-core/raredisease",
             "contributors": [
                 {
@@ -45127,7 +45127,7 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/rnaseq",
             "created_at": "2018-03-29T13:10:58Z",
-            "updated_at": "2026-06-12T16:27:39Z",
+            "updated_at": "2026-06-15T02:14:08Z",
             "pushed_at": "2026-06-12T18:00:01Z",
             "homepage": "https://nf-co.re/rnaseq",
             "size": 84540,
@@ -55219,7 +55219,7 @@
             "forks_count": 220,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 72,
+            "open_issues_count": 73,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -55238,7 +55238,7 @@
             ],
             "visibility": "public",
             "forks": 220,
-            "open_issues": 72,
+            "open_issues": 73,
             "watchers": 330,
             "default_branch": "master",
             "temp_clone_token": "",
@@ -55309,7 +55309,7 @@
             "dev_branch_protection_enforce_admins": false,
             "TEMPLATE_branch_exists": true,
             "has_required_topics": true,
-            "open_pr_count": 10,
+            "open_pr_count": 11,
             "repository_url": "https://github.com/nf-core/scrnaseq",
             "contributors": [
                 {