[automated] Update json files

Author: nf-core-bot

public/components.json

@@ -342420,6 +342420,169 @@
         }
       ]
     },
+    {
+      "name": "sourmash_pairwise",
+      "path": "modules/nf-core/sourmash/pairwise/meta.yml",
+      "tree_sha": "680d13eb5a3b2ed6b906174359d00e490899f771",
+      "files": [
+        "modules/nf-core/sourmash/pairwise/environment.yml",
+        "modules/nf-core/sourmash/pairwise/main.nf",
+        "modules/nf-core/sourmash/pairwise/meta.yml",
+        "modules/nf-core/sourmash/pairwise/tests/main.nf.test",
+        "modules/nf-core/sourmash/pairwise/tests/main.nf.test.snap",
+        "modules/nf-core/sourmash/pairwise/tests/nextflow.config"
+      ],
+      "type": "module",
+      "meta": {
+        "name": "sourmash_pairwise",
+        "description": "Fast, multithreaded comparison of many FracMinHash signatures generated by sourmash sketch.",
+        "keywords": [
+          "compare",
+          "genomics",
+          "pairwise",
+          "metagenomics",
+          "sourmash",
+          "branchwater",
+          "kmer",
+          "containment"
+        ],
+        "tools": [
+          {
+            "sourmash": {
+              "description": "Quickly search, compare, and analyze genomic and metagenomic data sets.",
+              "homepage": "https://sourmash.readthedocs.io/",
+              "documentation": "https://sourmash.readthedocs.io/",
+              "tool_dev_url": "https://github.com/sourmash-bio/sourmash",
+              "doi": "10.21105/joss.00027",
+              "licence": [
+                "BSD-3-clause"
+              ],
+              "identifier": "biotools:sourmash"
+            }
+          },
+          {
+            "sourmash_plugin_branchwater": {
+              "description": "Fast, multithreaded sourmash operations: search, compare, and gather.",
+              "homepage": "https://github.com/sourmash-bio/sourmash_plugin_branchwater",
+              "documentation": "https://github.com/sourmash-bio/sourmash_plugin_branchwater/blob/main/doc/README.md",
+              "tool_dev_url": "https://github.com/sourmash-bio/sourmash_plugin_branchwater",
+              "licence": [
+                "AGPL-3.0"
+              ],
+              "doi": "10.1101/2022.11.02.514947",
+              "identifier": ""
+            }
+          }
+        ],
+        "input": [
+          [
+            {
+              "meta": {
+                "type": "map",
+                "description": "Groovy Map containing sample information. e.g. [ id:'test', single_end:false ]"
+              }
+            },
+            {
+              "signatures": {
+                "type": "file",
+                "description": "Files containing signatures (hash sketches) of samples",
+                "pattern": "*.{sig,zip}",
+                "ontologies": [
+                  {
+                    "edam": "http://edamontology.org/format_3987"
+                  }
+                ]
+              }
+            }
+          ],
+          {
+            "file_list": {
+              "type": "file",
+              "description": "An optional file specifying a list of file paths that should be appended to the input signatures.",
+              "ontologies": []
+            }
+          }
+        ],
+        "output": {
+          "csv": [
+            [
+              {
+                "meta": {
+                  "type": "map",
+                  "description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
+                }
+              },
+              {
+                "*pairwise.csv": {
+                  "type": "file",
+                  "description": "Comparisons in long CSV format",
+                  "pattern": "*.pairwise.csv",
+                  "ontologies": [
+                    {
+                      "edam": "http://edamontology.org/format_3752"
+                    }
+                  ]
+                }
+              }
+            ]
+          ],
+          "versions_sourmash": [
+            [
+              {
+                "${task.process}": {
+                  "type": "string",
+                  "description": "The name of the process"
+                }
+              },
+              {
+                "sourmash": {
+                  "type": "string",
+                  "description": "The name of the tool"
+                }
+              },
+              {
+                "sourmash --version 2>&1 | sed 's/^sourmash //'": {
+                  "type": "eval",
+                  "description": "The expression to obtain the version of the tool"
+                }
+              }
+            ]
+          ]
+        },
+        "topics": {
+          "versions": [
+            [
+              {
+                "${task.process}": {
+                  "type": "string",
+                  "description": "The name of the process"
+                }
+              },
+              {
+                "sourmash": {
+                  "type": "string",
+                  "description": "The name of the tool"
+                }
+              },
+              {
+                "sourmash --version 2>&1 | sed 's/^sourmash //'": {
+                  "type": "eval",
+                  "description": "The expression to obtain the version of the tool"
+                }
+              }
+            ]
+          ]
+        },
+        "authors": [
+          "@worthyc51"
+        ],
+        "maintainers": [
+          "@worthyc51",
+          "@zachary-foster"
+        ]
+      },
+      "git_sha": "1a6d192f85a35f260ca5b70195f87536d78b4717"
+    },
     {
       "name": "sourmash_sketch",
       "path": "modules/nf-core/sourmash/sketch/meta.yml",
@@ -391787,6 +391950,10 @@
           "name": "spatialaxe",
           "version": "1.0.0"
         },
+        {
+          "name": "spatialaxe",
+          "version": "1.0.0"
+        },
         {
           "name": "spatialaxe",
           "version": "1.0.0"
@@ -412005,6 +412172,6 @@
       "git_sha": "9edc097c4904d60808b5c4c9978934e091aded1a"
     }
   ],
-  "commit_sha": "42f1a6b3cc7ffd8f2aff1b22c7e4671aeb1c50a6",
-  "updated_at": "2026-07-30T14:56:02.215Z"
+  "commit_sha": "1a6d192f85a35f260ca5b70195f87536d78b4717",
+  "updated_at": "2026-07-31T03:09:15.347Z"
 }