Update and integrate age group meta (#767) #9
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| name: Rebuild Artifacts and Propagate Updates | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'modules/**' | |
| concurrency: | |
| group: rebuild-artifacts-main | |
| cancel-in-progress: true | |
| env: | |
| SCHEMATIC_VERSION: 24.7.2 | |
| SYNAPSE_AUTH_TOKEN: ${{ secrets.DATA_MODEL_SERVICE }} | |
| jobs: | |
| rebuild-and-propagate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10.12' | |
| - name: Setup custom build tools | |
| shell: bash | |
| run: | | |
| bash < <(curl -s https://raw.githubusercontent.com/babashka/babashka/master/install) | |
| git clone --depth 1 https://github.com/anngvu/retold.git | |
| pip install linkml==v1.8.1 synapseclient jsonref | |
| npm install -g json-dereference-cli | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| - name: Rebuild all artifacts | |
| run: | | |
| echo "Rebuilding all artifacts on main branch" | |
| make -B | |
| echo "Generating JSON schemas" | |
| python utils/gen-json-schema-class.py | |
| make Superdataset | |
| - name: Setup schematic and do convert pass | |
| run: | | |
| pip install schematicpy==${{ env.SCHEMATIC_VERSION }} | |
| pip show schematicpy | |
| schematic schema convert NF.jsonld | |
| python utils/fix_display_names.py retold_NF.jsonld NF.jsonld | |
| - name: Commit all artifacts if there are changes | |
| id: commit_artifacts | |
| run: | | |
| if [[ $(git diff --exit-code) ]]; then | |
| echo "Artifacts have changed and will be committed to main" | |
| git config --local user.email "nf-osi@sagebionetworks.org" | |
| git config --local user.name "nf-osi[bot]" | |
| git add NF.jsonld dist/NF.yaml dist/NF.ttl registered-json-schemas/ | |
| git commit -m "Rebuild all artifacts [skip ci]" | |
| echo "artifacts_changed=true" >> "$GITHUB_OUTPUT" | |
| else | |
| echo "No artifact changes" | |
| echo "artifacts_changed=false" >> "$GITHUB_OUTPUT" | |
| fi | |
| - name: Push changes to main | |
| if: steps.commit_artifacts.outputs.artifacts_changed == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: main | |
| - name: Dispatch update workflow for dcc-site | |
| if: steps.commit_artifacts.outputs.artifacts_changed == 'true' | |
| uses: benc-uk/workflow-dispatch@v1 | |
| with: | |
| workflow: Handle data model update | |
| repo: nf-osi/dcc-site | |
| ref: refs/heads/main | |
| token: ${{ secrets.SERVICE_TOKEN }} |