fixes to the image linking and mermaid packages

the change in the schema was added to

Author: HendrikBorgelt

docs/assets/coremeta4cat_vocabulary.xlsx

@@ -2973,7 +2973,7 @@ interval rather than a point value. Provide the shared unit as a QUDT DefinedTer
 
 **Cardinality:**  Optional
 
-**CURIE:** [`SIO:000008`](http://semanticscience.org/resource/SIO_000008)
+**CURIE:** [`VOC4CAT:0008116`](https://w3id.org/nfdi4cat/voc4cat_0008116)
 
 **Schema Reference:** [has_heating_rate](./elements/slots/has_heating_rate.md)
 
@@ -3161,7 +3161,7 @@ interval rather than a point value. Provide the shared unit as a QUDT DefinedTer
 
 **Cardinality:**  Optional
 
-**CURIE:** [`SIO:000008`](http://semanticscience.org/resource/SIO_000008)
+**CURIE:** [`VOC4CAT:0008116`](https://w3id.org/nfdi4cat/voc4cat_0008116)
 
 **Schema Reference:** [has_heating_rate](./elements/slots/has_heating_rate.md)
 
@@ -3349,7 +3349,7 @@ interval rather than a point value. Provide the shared unit as a QUDT DefinedTer
 
 **Cardinality:**  Optional
 
-**CURIE:** [`SIO:000008`](http://semanticscience.org/resource/SIO_000008)
+**CURIE:** [`VOC4CAT:0008116`](https://w3id.org/nfdi4cat/voc4cat_0008116)
 
 **Schema Reference:** [has_heating_rate](./elements/slots/has_heating_rate.md)
 
@@ -5356,7 +5356,7 @@ interval rather than a point value. Provide the shared unit as a QUDT DefinedTer
 
 **Cardinality:**  Optional, Multivalued
 
-**CURIE:** [`coremeta4cat:heating_ramp`](https://w3id.org/nfdi4cat/coremeta4cat/heating_ramp)
+**CURIE:** [`VOC4CAT:0008116`](https://w3id.org/nfdi4cat/voc4cat_0008116)
 
 **Schema Reference:** [heating_ramp](./elements/slots/heating_ramp.md)
 

docs/assets/metadata_characterization_hierarchy.html

@@ -7,7 +7,7 @@ The model draws its terminology from [Voc4Cat](https://nfdi4cat.github.io/voc4ca
 > CoreMeta4Cat is a living standard. Community feedback — submitted via the **Submit Term Feedback** button — continuously shapes the addition, revision, and removal of data fields.
 
 <div style="text-align: center; margin: 1.5rem 0;">
-  <img src="../images/CoreMeta4Cat_Picture.png" alt="CoreMeta4Cat model overview" style="width: 60%; border-radius: 8px;">
+  <img src="./images/CoreMeta4Cat_Picture.png" alt="CoreMeta4Cat model overview" style="width: 60%; border-radius: 8px;">
 </div>
 
 ## Getting Started
@@ -35,13 +35,13 @@ Semantically enrich your data using the CoreMeta4Cat LinkML schema. Ideal for pr
 
 <div class="grid cards" style="color: #1a1a2e; background: #eef2fb; font-size: 0.9rem;" markdown>
 
-- **[<img src="../images/Synthesis.svg" width="30"> Synthesis](#synthesis)**
+- **[<img src="./images/Synthesis.svg" width="30"> Synthesis](#synthesis)**
 
-- **[<img src="../images/Characterization.svg" width="30"> Characterization](#characterization)**
+- **[<img src="./images/Characterization.svg" width="30"> Characterization](#characterization)**
 
-- **[<img src="../images/Reaction.svg" width="30"> Reaction](#reaction)**
+- **[<img src="./images/Reaction.svg" width="30"> Reaction](#reaction)**
 
-- **[<img src="../images/Simulation.svg" width="30"> Simulation](#simulation)**
+- **[<img src="./images/Simulation.svg" width="30"> Simulation](#simulation)**
 
 
 
@@ -68,7 +68,7 @@ The inner layer defines mandatory baseline metadata, enabling consistent categor
 ## [Synthesis](synthesis.md)
 <div style="text-align: center;">
     <a href="synthesis">
-    <img src="../images/Synthesis.svg" alt="Synthesis logo" style="width: 50%;">
+    <img src="./images/Synthesis.svg" alt="Synthesis logo" style="width: 50%;">
     </a>
 </div>
 
@@ -77,7 +77,7 @@ The Synthesis metadata group defines the minimal information required to documen
 ## [Characterization](characterization.md)
 <div style="text-align: center;">
     <a href="characterization">
-    <img src="../images/Characterization.svg" alt="Characterization logo" style="width: 50%;">
+    <img src="./images/Characterization.svg" alt="Characterization logo" style="width: 50%;">
     </a>
 </div>
 The Characterization metadata group specifies the information needed to describe the physical and chemical nature of a catalyst. It covers equipment, techniques, sample preparation, and detailed method-specific parameters (e.g., XRD, XAS, IR, Raman, NMR, GC-MS, TEM). By standardizing reporting across many analytical methods, it ensures catalyst properties are consistently documented and interpretable.
@@ -86,7 +86,7 @@ The Characterization metadata group specifies the information needed to describe
 
 <div style="text-align: center;">
     <a href="reaction">
-    <img src="../images/Reaction.svg" alt="Reaction logo" style="width: 50%;">
+    <img src="./images/Reaction.svg" alt="Reaction logo" style="width: 50%;">
     </a>
 </div>
 
@@ -95,7 +95,7 @@ The Reaction metadata group defines the minimum information required to describe
 ## [Simulation](simulation.md)
 <div style="text-align: center;">
     <a href="simulation">
-    <img src="../images/Simulation.svg" alt="Simulation logo" style="width: 50%;">
+    <img src="./images/Simulation.svg" alt="Simulation logo" style="width: 50%;">
     </a>
 </div>
 
@@ -106,7 +106,7 @@ The Simulation metadata group specifies the essential information for reporting
 <iframe
     src="assets/metadata_coremeta4cat_overview.html"
     width="100%"
-    height= "800vh"
+    height= "455vh"
     style="border: 2px solid #5C88DA; background-color: #F0F8FF;
     "
     allowfullscreen

docs/assets/metadata_coremeta4cat_overview.html

@@ -652,9 +652,8 @@ suspended in an upward-flowing gas or liquid stream.
 <summary><strong>product identification method</strong> (Mandatory, Multivalued)</summary>
 
 **Description:** The analytical method used to identify and/or quantify reaction products.
-Should reference a CharacterizationTechnique instance (e.g. a GCMS or
-HPLC_MS object from coremeta4cat_characterization_ap). The abstract stub
-ProductIdentificationMethod is retained for backward compatibility.
+Should reference a CharacterizationTechnique instance (e.g. GCMS, HPLC_MS).
+The abstract stub ProductIdentificationMethod is retained for backward compatibility.
 
 **Data Type:** ProductIdentificationMethod
 

docs/assets/metadata_reaction_hierarchy.html

@@ -30,16 +30,16 @@ description: "The CoreMeta4Cat describes the minimum information which must be r
   \ SimulationMethod are\n  modelled as Plan (from dcat_ap_plus), the protocol realized\
   \ by the Activity.\n\nThis file is the top-level aggregator. It imports coremeta4cat_common\
   \ (shared\nslots and enums) and the four subprofile modules.\n\nFull import hierarchy:\n\
-  \  coremeta4cat.yaml  (this file \u2014 aggregator + CatalysisDataset entry point)\n\
-  \    +-- coremeta4cat_common.yaml         (shared slots, enums)\n          +-- chem_dcat_ap\
-  \          (SubstanceSample, ChemicalSubstance, \u2026)\n                +-- chemical_reaction_ap\n\
-  \                      +-- chemical_entities_ap\n                            +--\
-  \ material_entities_ap\n                                  +-- dcat_ap_plus  (DCAT-AP-PLUS\
-  \ base)\n    +-- coremeta4cat_synthesis_ap         (Step 3 \u2014 Synthesis, PreparationMethod,\
-  \ mixins)\n    +-- coremeta4cat_characterization_ap  (Step 4 \u2014 Characterization,\
-  \ 24 techniques, mixins)\n    +-- coremeta4cat_reaction_ap          (Step 5 \u2014\
-  \ Reaction, 8 Reactor subclasses)\n    +-- coremeta4cat_simulation_ap        (Step\
-  \ 6 \u2014 Simulation, 4 methods, 12 properties, mixins)"
+  ```\n  coremeta4cat.yaml  (this file \u2014 aggregator + CatalysisDataset entry\
+  \ point)\n    +-- coremeta4cat_common.yaml         (shared slots, enums)\n     \
+  \     +-- chem_dcat_ap          (SubstanceSample, ChemicalSubstance, \u2026)\n \
+  \               +-- chemical_reaction_ap\n                      +-- chemical_entities_ap\n\
+  \                            +-- material_entities_ap\n                        \
+  \          +-- dcat_ap_plus  (DCAT-AP-PLUS base)\n    +-- coremeta4cat_synthesis_ap\
+  \         (Step 3 \u2014 Synthesis, PreparationMethod, mixins)\n    +-- coremeta4cat_characterization_ap\
+  \  (Step 4 \u2014 Characterization, 24 techniques, mixins)\n    +-- coremeta4cat_reaction_ap\
+  \          (Step 5 \u2014 Reaction, 8 Reactor subclasses)\n    +-- coremeta4cat_simulation_ap\
+  \        (Step 6 \u2014 Simulation, 4 methods, 12 properties, mixins)\n```"
 title: CoreMeta4cat Metadata Reference Model
 id: https://w3id.org/nfdi4cat/coremeta4cat
 version: 1.0.0
@@ -679,9 +679,9 @@ slots:
     description: Temperature ramp rate during a heating or cooling step.
     from_schema: https://w3id.org/nfdi4cat/coremeta4cat/common/
     mappings:
-    - SIO:000008
+    - VOC4CAT:0008116
     is_a: has_quantitative_attribute
-    slot_uri: SIO:000008
+    slot_uri: VOC4CAT:0008116
     owner: TemperatureProgramMixin
     domain_of:
     - TemperatureProgramMixin
@@ -886,9 +886,9 @@ slots:
     description: Temperature ramp rate during the calcination step.
     from_schema: https://w3id.org/nfdi4cat/coremeta4cat/common/
     mappings:
-    - SIO:000008
+    - VOC4CAT:0008116
     is_a: has_heating_rate
-    slot_uri: SIO:000008
+    slot_uri: VOC4CAT:0008116
     owner: CalcinationMixin
     domain_of:
     - CalcinationMixin
@@ -1482,8 +1482,8 @@ slots:
     description: Chemical agent used to induce precipitation (e.g. NaOH, NH3).
     from_schema: https://w3id.org/nfdi4cat/coremeta4cat/synthesis/
     mappings:
-    - coremeta4cat:precipitating_agent
-    slot_uri: coremeta4cat:precipitating_agent
+    - VOC4CAT:0008203
+    slot_uri: VOC4CAT:0008203
     owner: PrecipitationMixin
     domain_of:
     - PrecipitationMixin
@@ -3486,8 +3486,8 @@ slots:
     description: Temperature ramp rate in GC oven programme.
     from_schema: https://w3id.org/nfdi4cat/coremeta4cat/characterization/
     mappings:
-    - coremeta4cat:heating_ramp
-    slot_uri: coremeta4cat:heating_ramp
+    - VOC4CAT:0008116
+    slot_uri: VOC4CAT:0008116
     owner: GCMS
     domain_of:
     - GCMS
@@ -7594,11 +7594,9 @@ slots:
     description: 'The analytical method used to identify and/or quantify reaction
       products.
 
-      Should reference a CharacterizationTechnique instance (e.g. a GCMS or
-
-      HPLC_MS object from coremeta4cat_characterization_ap). The abstract stub
+      Should reference a CharacterizationTechnique instance (e.g. GCMS, HPLC_MS).
 
-      ProductIdentificationMethod is retained for backward compatibility.'
+      The abstract stub ProductIdentificationMethod is retained for backward compatibility.'
     from_schema: https://w3id.org/nfdi4cat/coremeta4cat/reaction/
     mappings:
     - coremeta4cat:product_identification_method
@@ -13630,11 +13628,9 @@ classes:
         description: 'The analytical method used to identify and/or quantify reaction
           products.
 
-          Should reference a CharacterizationTechnique instance (e.g. a GCMS or
-
-          HPLC_MS object from coremeta4cat_characterization_ap). The abstract stub
+          Should reference a CharacterizationTechnique instance (e.g. GCMS, HPLC_MS).
 
-          ProductIdentificationMethod is retained for backward compatibility.'
+          The abstract stub ProductIdentificationMethod is retained for backward compatibility.'
         range: ProductIdentificationMethod
         required: true
         multivalued: true
@@ -17914,7 +17910,7 @@ classes:
     class_uri: qudt:Quantity
 metamodel_version: 1.7.0
 source_file: coremeta4cat.yaml
-source_file_date: '2026-06-05T13:11:48'
-source_file_size: 6777
-generation_date: '2026-06-06T18:18:45'
+source_file_date: '2026-06-07T17:29:03'
+source_file_size: 6791
+generation_date: '2026-06-07T17:58:47'