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HendrikBorgeltHendrikBorgelt
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Merge pull request #27 from nfdi4cat/gen_chart_update
Update metadata chart assets and generator
2 parents 7a567d5 + c27cbcb commit e5c1718

8 files changed

Lines changed: 118 additions & 806 deletions

‎docs/assets/metadata_characterization_hierarchy.html‎

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‎docs/assets/metadata_collapsed_charts_all_sheets.html‎

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‎docs/assets/metadata_coremeta4cat_overview.html‎

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‎docs/assets/metadata_reaction_hierarchy.html‎

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‎docs/assets/metadata_simulation_hierarchy.html‎

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‎docs/assets/metadata_synthesis_hierarchy.html‎

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‎docs/index.md‎

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@@ -104,7 +104,7 @@ The Simulation metadata group specifies the essential information for reporting
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## Interactive diagram
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<iframe
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src="assets/metadata_collapsed_charts_all_sheets.html"
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src="assets/metadata_coremeta4cat_overview.html"
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width="100%"
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height= "800vh"
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style="border: 2px solid #5C88DA; background-color: #F0F8FF;

‎scripts/generate_charts.py‎

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@@ -244,6 +244,88 @@ def build_sunburst_chart(schema: dict, class_name: str) -> str:
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"""
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# ─────────────────────────────────────────────────────────────────────────────
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# Overview chart (all four data classes under a single CoreMeta4Cat root)
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# ─────────────────────────────────────────────────────────────────────────────
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def build_overview_chart(schema: dict) -> str:
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"""
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Return standalone HTML for a combined sunburst that shows all four
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CoreMeta4Cat data classes (Synthesis, Characterization, Reaction,
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Simulation) as branches under a single 'CoreMeta4Cat' root node.
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Each branch uses the colour palette of its respective data class.
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"""
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main_classes = ["Synthesis", "Characterization", "Reaction", "Simulation"]
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ids: list[str] = []
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names: list[str] = []
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parents: list[str] = []
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colors: list[str] = []
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hover: list[str] = []
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root_id = "CoreMeta4Cat"
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_add_node(ids, names, parents, colors, hover,
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root_id, "CoreMeta4Cat", "", "#555555",
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"CoreMeta4Cat — catalysis metadata schema")
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for cls in main_classes:
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key = cls.lower()
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color_map = BASE_COLORS.get(key, BASE_COLORS["coremeta4cat"])
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cls_id = f"{root_id}|{cls}"
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_add_node(ids, names, parents, colors, hover,
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cls_id, cls, root_id, color_map["M"],
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f"Data class: {cls}")
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_build_tree_for_class(
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schema, cls, cls_id,
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ids, names, parents, colors, hover,
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color_map, cls,
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)
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fig = px.sunburst(ids=ids, names=names, parents=parents, hover_name=hover)
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fig.update_traces(marker=dict(colors=colors))
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fig.update_layout(
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title=dict(text="CoreMeta4Cat — Schema Overview", x=0.5),
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margin=dict(t=40, l=10, r=10, b=10),
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autosize=True,
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)
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chart_html = to_html(
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fig,
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full_html=False,
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include_plotlyjs=False,
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config={"responsive": True},
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)
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return f"""<!DOCTYPE html>
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<html>
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<head>
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<meta charset='UTF-8'>
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<title>CoreMeta4Cat Schema Overview</title>
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<script src='https://cdn.plot.ly/plotly-latest.min.js'></script>
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<style>
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html, body {{
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margin: 0;
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padding: 0;
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height: 100%;
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width: 100%;
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}}
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.chart-container {{
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width: 100%;
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height: 100vh;
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}}
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</style>
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</head>
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<body>
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<div class="chart-container">
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{chart_html}
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</div>
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</body>
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</html>
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"""
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# ─────────────────────────────────────────────────────────────────────────────
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# Entry point
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# ─────────────────────────────────────────────────────────────────────────────
@@ -263,7 +345,12 @@ def main(schema_dir: str, output_dir: str) -> None:
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dest.write_text(html, encoding="utf-8")
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print(f" OK {dest}")
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print(f"\nDone -- {len(main_classes)} charts written to '{output_dir}'.")
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overview_html = build_overview_chart(schema)
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overview_dest = out / "metadata_coremeta4cat_overview.html"
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overview_dest.write_text(overview_html, encoding="utf-8")
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print(f" OK {overview_dest}")
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print(f"\nDone -- {len(main_classes) + 1} charts written to '{output_dir}'.")
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if __name__ == "__main__":

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