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a 3D brain segmentation model using u-net
this model using python 3.10.2
to install this model please follow below tutorial
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step 1: clone respository gif_your_nifti by using this command
git clone https://github.com/miykael/gif_your_nifti.git
step 2: download and extract dataset from https://www.kaggle.com/code/rastislav/3d-mri-brain-tumor-segmentation-u-net/data
dataset is included:
training and validation dataset: https://www.kaggle.com/datasets/awsaf49/brats20-dataset-training-validation
model per class evaluate: https://www.kaggle.com/datasets/rastislav/modelperclasseval
model x80 dcs65: https://www.kaggle.com/datasets/rastislav/model-x80-dcs65
step 3: install necessary modules which required in the first cell of ipynb file
using command pip install [module_name] to intall modules
step 4: install pydot and graphviz [optional]
install pydot by command: pip install pydot
install graphviz follow this link: https://graphviz.gitlab.io/download/
step 5: change the directories in ipynb file which point to these required files
step 6: change epoch value
step 7: run and evaluate