Merge pull request #143 from nichollsh/hn/testsuites

Hn/testsuites

Author: nichollsh

CITATION.cff

@@ -5,7 +5,7 @@ authors:
   given-names: "Harrison"
   orcid: "https://orcid.org/0000-0002-8368-4641"
 title: "Convective shutdown in the atmospheres of lava worlds"
-version: 1.7.7
+version: 1.7.8
 doi: 10.1093/mnras/stae2772
-date-released: 2025-10-16
+date-released: 2025-10-21
 url: "https://doi.org/10.1093/mnras/stae2772"

Project.toml

@@ -1,7 +1,7 @@
 name = "AGNI"
 uuid = "ede838c1-9ec3-4ebe-8ae8-da4091b3f21c"
 authors = ["Harrison Nicholls <harrison.nicholls@physics.ox.ac.uk>"]
-version = "1.7.8"
+version = "1.7.9"
 
 [deps]
 ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"

codemeta.json

@@ -13,11 +13,11 @@
   "identifier": "",
   "codeRepository": "https://github.com/nichollsh/AGNI",
   "datePublished": "2024-12-29",
-  "dateModified": "2025-10-16",
+  "dateModified": "2025-10-21",
   "dateCreated": "2024-09-13",
   "description": "An open-source model for extreme atmospheres on rocky exoplanets.",
   "keywords": "physics, radiative transfer, exoplanets, astronomy, convection, radiation, planets, atmospheres",
   "license": "GPL v3.0",
   "title": "AGNI",
-  "version": "1.7.8"
+  "version": "1.7.9"
 }

deps/build.jl

@@ -22,8 +22,10 @@ cd(abspath(RAD_DIR,"julia","lib")) do
 end
 
 # Download basic data
-println("Get data")
-get_data = abspath(ROOT_DIR,"src","get_data.sh")
-run(`bash $get_data basic`)
+if !("nodata" in ARGS)
+    println("Get data")
+    get_data = abspath(ROOT_DIR,"src","get_data.sh")
+    run(`bash $get_data basic`)
+end
 
 println("Build completed")

src/atmosphere.jl

@@ -34,7 +34,7 @@ module atmosphere
     import ..spectrum
 
     # Constants
-    const AGNI_VERSION::String    = "1.7.8"  # current agni version
+    const AGNI_VERSION::String    = "1.7.9"  # current agni version
     const HYDROGRAV_STEPS::Int64  = 40       # num of sub-layers in hydrostatic integration
     const SOCVER_minimum::Float64 = 2407.2   # minimum required socrates version
 

src/get_agni.sh

@@ -3,6 +3,13 @@
 
 set -e
 
+# User arguments
+if [ -z "$1" ]; then
+    testsuite="all" # default
+else
+    testsuite="$1" # requested test suite
+fi
+
 # Update from GitHub
 echo "Updating from GitHub..."
 git pull
@@ -15,7 +22,7 @@ if [ -n "$RAD_DIR" ]; then
 else
     echo "Found SOCRATES path: no"
     echo "You need to install SOCRATES AND set the RAD_DIR environment variable"
-    echo "Check the docs: https://nichollsh.github.io/AGNI/"
+    echo "Check the docs: https://www.h-nicholls.space/AGNI/"
     exit 1
 fi
 
@@ -25,11 +32,11 @@ rm -f Manifest.toml
 julia "$root/deps/build.jl"
 julia -e 'using Pkg; Pkg.activate("."); Pkg.instantiate()'
 
-# Run tests
+# Run tests (suite set by CLI argument)
 echo "Running tests..."
 dir=$(pwd)
 cd $root/test/
-julia runtests.jl fast
+julia runtests.jl "$testsuite"
 cd $dir
 
 echo "Done!"

src/get_data.sh

@@ -102,15 +102,25 @@ function zenodo {
     mkdir -p $2
     wget -qO $tgt $url
 
-    # check if command failed
+    # check if command failed or if file does not exist
     if [ $? -ne 0 ]; then
         echo "ERROR: Failed to download $1. Issue with wget command"
-        wget -O - $url
-        exit 1
+    elif [[ ! -f "$tgt" ]]; then
+        echo "ERROR: Failed to download $1. File not found on disk."
+    else
+        return 0
     fi
 
-    # check file exists
-    if [[ ! -f "$tgt" ]]; then
+    # try again at downloading the file?
+    echo "Trying again to download the file"
+    sleep 1 
+    wget -qO $tgt $url
+
+    # check if command failed or if file does not exist
+    if [ $? -ne 0 ]; then
+        echo "ERROR: Failed to download $1. Issue with wget command"
+        exit 1
+    elif [[ ! -f "$tgt" ]]; then
         echo "ERROR: Failed to download $1. File not found on disk."
         exit 1
     fi
@@ -223,7 +233,7 @@ function handle_request {
             anyspec Oak 318
             # anyspec Dayspring 16
             anyspec Dayspring 48
-            anyspec Honeyside 256
+            # anyspec Honeyside 256
 
             zenodo 15721440 $stellar sun.txt