Fix docs index formatting. Fix user-agent construction in get_data

Author: nichollsh

README.md

@@ -17,13 +17,13 @@
   <a href="https://ascl.net/2508.020"><img src="https://img.shields.io/badge/ASCL%20ID-2508.020-blue.svg" alt="ascl:2508.020" /></a>
     <a href="https://emac.gsfc.nasa.gov?cid=2603-003"><img src="https://img.shields.io/badge/EMAC%20ID-2603.003-blue.svg" alt="ascl:2508.020" /></a>
   <a href="https://doi.org/10.5281/zenodo.15386789"><img src="https://img.shields.io/badge/Zenodo-17431569-blue.svg"></a>
+  <a href="LICENSE.txt"><img src="https://img.shields.io/github/license/nichollsh/AGNI?label=License"></a>
 </p>
 <p align="center" style="margin: -7px">
   <a href="https://github.com/nichollsh/AGNI/actions/workflows/install_and_test.yml"><img src="https://gist.githubusercontent.com/nichollsh/e20f4fa3c7811c75d34005311fef3696/raw/covbadge.svg"></a>
   <a href="https://codecov.io/gh/nichollsh/AGNI"><img src="https://codecov.io/gh/nichollsh/AGNI/graph/badge.svg"></a>
   <a href="https://github.com/nichollsh/AGNI/actions/workflows/install_and_test.yml"><img src="https://img.shields.io/endpoint?url=https://gist.githubusercontent.com/nichollsh/e20f4fa3c7811c75d34005311fef3696/raw/tests-total.json"></a>
   <a href="https://www.h-nicholls.space/AGNI/"><img src="https://github.com/nichollsh/AGNI/actions/workflows/documentation.yml/badge.svg"></a>
-  <a href="LICENSE.txt"><img src="https://img.shields.io/github/license/nichollsh/AGNI?label=License"></a>
 </p>
 
 

docs/src/index.md

@@ -1,14 +1,10 @@
 ```@raw html
     <img class="display-light-only" src="assets/logo_title_light.svg" width=32% alt="AGNI logo, light mode"/>
     <img class="display-dark-only"  src="assets/logo_title_dark.svg"  width=32% alt="AGNI logo, dark mode"/>
+
     <p align="center">
         <b>An open-source model for extreme atmospheres on rocky exoplanets</b>
     </p>
-    <p align="center">
-        <a href="https://github.com/nichollsh/AGNI/actions/workflows/install_and_test.yml"><img src="https://gist.githubusercontent.com/nichollsh/e20f4fa3c7811c75d34005311fef3696/raw/covbadge.svg" alt="test coverage badge"/></a>
-        <a href="https://codecov.io/gh/nichollsh/AGNI"><img src="https://codecov.io/gh/nichollsh/AGNI/graph/badge.svg" alt="codecov badge"/></a>
-        <a href="https://github.com/nichollsh/AGNI/actions/workflows/install_and_test.yml"><img src="https://img.shields.io/endpoint?url=https://gist.githubusercontent.com/nichollsh/e20f4fa3c7811c75d34005311fef3696/raw/tests-total.json" alt="number of tests badge"/></a>
-    </p>
 ```
 
 AGNI's primary purpose is to simulate the atmospheric temperature-, height-, and compositional-structures of atmospheres overlying magma oceans. It does this while ensuring that radiative-convective equilibrium is maintained throughout the atmosphere. [SOCRATES](https://proteus-framework.org/SOCRATES/) is used to perform correlated-k radiative transfer including: shortwave irradiation from the star, surface emission, line absorption, Rayleigh scattering, clouds, aerosols, and collisional absorption. Mixing length theory is used to parametrise convection. AGNI also supports real gas equations of state, self-gravitation, and various spectral surface compositions. Accounting for these energy transport processes permits an energy-conserving calculation of atmospheric structure, obtained using numerical optimisation, which also yields realistic cooling rates for young rocky planets with magma oceans.

src/get_data.sh

@@ -22,10 +22,10 @@ fi
 # User agent string to identify the script to Zenodo
 os=$(uname -s)
 arch=$(uname -m)
-ua="AGNI_get_data/1.0 ($os $arch)"
+ua="AGNI/1.0 ($os $arch)"
 
 # Check internet connectivity
-header=$(wget --user-agent $ua --spider -S "https://zenodo.org" 2>&1 | grep "HTTP")
+header=$(wget --user-agent "'$ua'" --spider -S "https://zenodo.org" 2>&1 | grep "HTTP")
 # echo $header
 if ! [[ $header == *"HTTP/1.1 2"* || $header == *"HTTP/1.1 3"* || $header == *"response 2"* || $header == *"response 3"* ]]; then
     # Return error if we don't get a positive HTTP response from Zenodo
@@ -110,7 +110,7 @@ function zenodo {
     # get data
     echo "    zenodo/$1 > $tgt"
     mkdir -p $2
-    wget --user-agent $ua -qO $tgt $url
+    wget --user-agent "'$ua'" -qO $tgt $url
 
     # check if command failed or if file does not exist
     if [ $? -ne 0 ]; then
@@ -124,7 +124,7 @@ function zenodo {
     # try again at downloading the file?
     echo "Trying again to download the file"
     sleep 1
-    wget --user-agent $ua -qO $tgt $url
+    wget --user-agent "'$ua'" -qO $tgt $url
 
     # check if command failed or if file does not exist
     if [ $? -ne 0 ]; then
@@ -171,7 +171,7 @@ function zenodo_all {
     # get data
     echo "    zenodo/$1 > $tgt"
     mkdir -p $2
-    wget --user-agent $ua -qO $tgt $url
+    wget --user-agent "'$ua'" -qO $tgt $url
 
     # check if command failed or if file does not exist
     if [ $? -ne 0 ]; then
@@ -186,7 +186,7 @@ function zenodo_all {
     # try again at downloading the file?
     echo "Trying again to download the file"
     sleep 1
-    wget --user-agent $ua -qO $tgt $url
+    wget --user-agent "'$ua'" -qO $tgt $url
 
     # check if command failed or if file does not exist
     if [ $? -ne 0 ]; then