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Commit b10c46d

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author
Nicholas Youngblut
committed
altered output dir names
1 parent a7b75f3 commit b10c46d

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-5
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tests/test_HtReads.py

+5-5
Original file line numberDiff line numberDiff line change
@@ -47,7 +47,7 @@ def test_main(script_runner):
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genome_table = os.path.join(data_dir, 'genome_list.txt')
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abund_table = os.path.join(data_dir, 'comm_wAbund.txt')
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temp_dir = os.path.join(tmp_dir, str(uuid.uuid4()))
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output_prefix = os.path.join(out_dir, 'TEST')
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output_prefix = os.path.join(out_dir, 'TEST-main')
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ret = script_runner.run('MGSIM', 'ht_reads', '--art-paired',
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'--tmp-dir', temp_dir,
@@ -63,7 +63,7 @@ def test_main_multi(script_runner):
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genome_table = os.path.join(data_dir, 'genome_list.txt')
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abund_table = os.path.join(data_dir, 'comm_wAbund.txt')
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temp_dir = os.path.join(tmp_dir, str(uuid.uuid4()))
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output_prefix = os.path.join(out_dir, 'TEST')
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output_prefix = os.path.join(out_dir, 'TEST-main-multi')
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ret = script_runner.run('MGSIM', 'ht_reads',
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'--art-paired', '-n', '2',
@@ -78,7 +78,7 @@ def test_main_zeros(script_runner):
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genome_table = os.path.join(data_dir, 'genome_list.txt')
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abund_table = os.path.join(data_dir, 'comm_wAbund_zeros.txt')
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temp_dir = os.path.join(tmp_dir, str(uuid.uuid4()))
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output_prefix = os.path.join(out_dir, 'TEST')
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output_prefix = os.path.join(out_dir, 'TEST-main-zeros')
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ret = script_runner.run('MGSIM', 'ht_reads', '--art-paired',
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'--tmp-dir', temp_dir,
@@ -94,7 +94,7 @@ def test_main_prefix(script_runner):
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genome_table = os.path.join(data_dir, 'genome_list.txt')
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abund_table = os.path.join(data_dir, 'comm_wAbund.txt')
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temp_dir = os.path.join(tmp_dir, str(uuid.uuid4()))
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output_prefix = os.path.join(out_dir, 'TEST')
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output_prefix = os.path.join(out_dir, 'TEST-main-prefix')
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ret = script_runner.run('MGSIM', 'ht_reads', '--art-paired',
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'--tmp-dir', temp_dir,
@@ -111,7 +111,7 @@ def test_main_large_frag_sd(script_runner):
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genome_table = os.path.join(data_dir, 'genome_list.txt')
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abund_table = os.path.join(data_dir, 'comm_wAbund.txt')
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temp_dir = os.path.join(tmp_dir, str(uuid.uuid4()))
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output_prefix = os.path.join(out_dir, 'TEST')
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output_prefix = os.path.join(out_dir, 'TEST-main-largeFragSize')
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ret = script_runner.run('MGSIM', 'ht_reads', '--art-paired',
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'--tmp-dir', temp_dir,

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