genepi.utils/DESCRIPTION at main · nicksunderland/genepi.utils · GitHub

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Package: genepi.utils
URL: https://nicksunderland.github.io/genepi.utils/
Title: GenEpi Utility Functions
Version: 0.1.8
Authors@R: c(person("Nicholas", "Sunderland", , "nicholas.sunderland@bristol.ac.uk", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-3625-630X")))
Description: The genepi.utils package is a collection of utility functions for working with genetic epidemiology data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews:
Depends: R (>= 4.1.0)
Imports:
    data.table,
    fst,
    furrr,
    future,
    MendelianRandomization,
    TwoSampleMR,
    indexevent,
    SlopeHunter,
    ggplot2,
    ggpubr,
    ggrepel,
    gridExtra,
    progressr,
    stats,
    utils,
    yaml,
    viridis,
    tibble,
    GenomicRanges,
    IRanges,
    rtracklayer,
    S7,
    cli
Remotes:
    mrcieu/TwoSampleMR,
    Osmahmoud/SlopeHunter,
    DudbridgeLab/indexevent
Suggests:
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
VignetteBuilder: knitr
Config/testthat/edition: 3
Collate:
    'chrpos_to_rsid.R'
    'class_colmap.R'
    'plink.R'
    'class_gwas.R'
    'class_mr.R'
    'clump.R'
    'collider_bias.R'
    'collider_bias_old.R'
    'colocalisation.R'
    'drug_target_proxy.R'
    'eaf_plot.R'
    'genepi.utils-package.R'
    'harmonise.R'
    'harmonise_gwas.R'
    'ld_matrix.R'
    'lift.R'
    'manhattan.R'
    'pz_plot.R'
    'qq_plot.R'
    'standardise_gwas.R'
    'utils.R'
    'zzz.R'