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‎CHANGES.rst‎

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24.0.0 (April 17, 2024)
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=======================
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Initial major release of 2024, featuring the **extraction of IQMs from DWI data**
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for first time in *MRIQC*'s timeline.
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24.0.1 (August 20, 2024)
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========================
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A patch release with a large number of bugfixes (mostly focusing on memory issues), maintenance
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activities, and the crawling of metadata before *Nipype* kicks in as a major optimization.
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.. admonition:: Author list for papers based on *MRIQC* 23.0 series
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With thanks to @jhlegarreta for his first contribution in `#1293 <https://github.com/nipreps/mriqc/pull/1293>__`.
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.. admonition:: Author list for papers based on *MRIQC* 24.0 series
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As described in the `Contributor Guidelines
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<https://www.nipreps.org/community/CONTRIBUTING/#recognizing-contributions>`__,
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anyone listed as developer or contributor may write and submit manuscripts
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about *MRIQC*.
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To do so, please move the author(s) name(s) to the front of the following list:
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Christopher J. Markiewicz \ :sup:`1`\ ; Zvi Baratz \ :sup:`2`\ ; Eilidh MacNicol \ :sup:`3`\ ; Céline Provins \ :sup:`4`\ ; Teresa Gomez \ :sup:`5`\ ; Dylan Nielson \ :sup:`6`\ ; Jan Varada \ :sup:`7`\ ; Ross W. Blair \ :sup:`1`\ ; Dimitri Papadopoulos Orfanos \ :sup:`8`\ ; William Triplett \ :sup:`9`\ ; Mathias Goncalves \ :sup:`1`\ ; Nikita Beliy \ :sup:`10`\ ; John A. Lee \ :sup:`11`\ ; Patrick Sadil \ :sup:`12`\ ; Ursula A. Tooley \ :sup:`13`\ ; Yibei Chen \ :sup:`14`\ ; James D. Kent \ :sup:`15`\ ; Yaroslav O. Halchenko \ :sup:`16`\ ; Bennet Fauber \ :sup:`17`\ ; Taylor Salo \ :sup:`18`\ ; Michael Krause \ :sup:`19`\ ; Pablo Velasco \ :sup:`20`\ ; Thomas Nichols \ :sup:`21`\ ; Adam Huffman \ :sup:`22`\ ; Elodie Savary \ :sup:`4`\ ; Johannes Achtzehn \ :sup:`23`\ ; Joke Durnez \ :sup:`1`\ ; Satrajit S. Ghosh \ :sup:`24`\ ; Adam C. Raikes \ :sup:`25`\ ; Asier Erramuzpe \ :sup:`26`\ ; Benjamin Kay \ :sup:`27`\ ; Daniel Birman \ :sup:`1`\ ; McKenzie P. Hagen \ :sup:`28`\ ; Michael Dayan \ :sup:`29`\ ; Michael G. Clark \ :sup:`30`\ ; Rafael Garcia-Dias \ :sup:`31`\ ; Adam G. Thomas \ :sup:`32`\ ; Russell A. Poldrack \ :sup:`1`\ ; Ariel Rokem \ :sup:`5`\ ; Oscar Esteban \ :sup:`4`\ .
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Christopher J. Markiewicz \ :sup:`1`\ ; Zvi Baratz \ :sup:`2`\ ; Eilidh MacNicol \ :sup:`3`\ ; Céline Provins \ :sup:`4`\ ; Teresa Gomez \ :sup:`5`\ ; Dylan Nielson \ :sup:`6`\ ; Ross W. Blair \ :sup:`1`\ ; Jan Varada \ :sup:`7`\ ; Dimitri Papadopoulos Orfanos \ :sup:`8`\ ; William Triplett \ :sup:`9`\ ; Mathias Goncalves \ :sup:`1`\ ; Nikita Beliy \ :sup:`10`\ ; John A. Lee \ :sup:`11`\ ; Yibei Chen \ :sup:`12`\ ; Ursula A. Tooley \ :sup:`13`\ ; Patrick Sadil \ :sup:`14`\ ; Yaroslav O. Halchenko \ :sup:`15`\ ; James D. Kent \ :sup:`16`\ ; Taylor Salo \ :sup:`17`\ ; Bennet Fauber \ :sup:`18`\ ; Thomas Nichols \ :sup:`19`\ ; Pablo Velasco \ :sup:`20`\ ; Michael Krause \ :sup:`21`\ ; Jon Haitz Legarreta Gorroño \ :sup:`22`\ ; Satrajit S. Ghosh \ :sup:`23`\ ; Joke Durnez \ :sup:`1`\ ; Johannes Achtzehn \ :sup:`24`\ ; Elodie Savary \ :sup:`4`\ ; Adam Huffman \ :sup:`25`\ ; Rafael Garcia-Dias \ :sup:`26`\ ; Michael G. Clark \ :sup:`27`\ ; Michael Dayan \ :sup:`28`\ ; McKenzie P. Hagen \ :sup:`29`\ ; Daniel Birman \ :sup:`1`\ ; Benjamin Kay \ :sup:`30`\ ; Asier Erramuzpe \ :sup:`31`\ ; Adam C. Raikes \ :sup:`32`\ ; Adam G. Thomas \ :sup:`33`\ ; Russell A. Poldrack \ :sup:`1`\ ; Ariel Rokem \ :sup:`5`\ ; Oscar Esteban \ :sup:`4`\ .
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Affiliations:
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9. University of Florida: Gainesville, Florida, US
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10. CRC ULiege, Liege, Belgium
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11. Quansight, Dublin, Ireland
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12. Johns Hopkins Bloomberg School of Public Health, MD, USA
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12. McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, USA
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13. Department of Neuroscience, University of Pennsylvania, PA, USA
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14. McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, USA
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15. Department of Psychology, University of Texas at Austin, TX, USA
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16. Psychological and Brain Sciences Department, Dartmouth College, NH, USA
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17. University of Michigan, Ann Arbor, USA
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18. Department of Psychology, Florida International University, FL, USA
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19. Max Planck Institute for Human Development, Berlin, Germany
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14. Johns Hopkins Bloomberg School of Public Health, MD, USA
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15. Psychological and Brain Sciences Department, Dartmouth College, NH, USA
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16. Department of Psychology, University of Texas at Austin, TX, USA
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17. Department of Psychology, Florida International University, FL, USA
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18. University of Michigan, Ann Arbor, USA
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19. Oxford Big Data Institute, University of Oxford, Oxford, GB
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20. Center for Brain Imaging, New York University, NY, USA
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21. Oxford Big Data Institute, University of Oxford, Oxford, GB
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22. Department of Physics, Imperial College London, London, UK
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23. Charité Berlin, Berlin, Germany
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24. McGovern Institute for Brain Research, MIT, MA, USA; and Department of Otolaryngology, Harvard Medical School, MA, USA
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25. Center for Innovation in Brain Science, University of Arizona, Tucson, AZ, USA
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26. Computational Neuroimaging Lab, BioCruces Health Research Institute
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27. Washington University School of Medicine, St.Louis, MO, USA
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28. Psychology Department, University of Washington, Seattle, WA, USA
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29. International Committee of the Red Cross - ICRC, Geneva, Switzerland
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30. National Institutes of Health, USA
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31. Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
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32. Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA
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21. Max Planck Institute for Human Development, Berlin, Germany
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22. Brigham and Women's Hospital, Mass General Brigham, Harvard Medical School, MA, USA
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23. McGovern Institute for Brain Research, MIT, MA, USA; and Department of Otolaryngology, Harvard Medical School, MA, USA
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24. Charité Berlin, Berlin, Germany
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25. Department of Physics, Imperial College London, London, UK
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26. Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
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27. National Institutes of Health, USA
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28. International Committee of the Red Cross - ICRC, Geneva, Switzerland
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29. Psychology Department, University of Washington, Seattle, WA, USA
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30. Washington University School of Medicine, St.Louis, MO, USA
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31. Computational Neuroimaging Lab, BioCruces Health Research Institute
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32. Center for Innovation in Brain Science, University of Arizona, Tucson, AZ, USA
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33. Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA
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CHANGES
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-------
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* FIX: Multiecho fMRI crashing with 'unhashable type' errors by @oesteban in https://github.com/nipreps/mriqc/pull/1295
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* FIX: Set ``n_procs`` instead of ``num_threads`` on node ``apply_hmc`` by @oesteban in https://github.com/nipreps/mriqc/pull/1309
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* FIX: Address memory issues by limiting ``BigPlot``'s parallelization. by @oesteban in https://github.com/nipreps/mriqc/pull/1320
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* FIX: Address memory issues in DWI pipeline by @oesteban in https://github.com/nipreps/mriqc/pull/1323
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* FIX: Limit IQMs' node number of processes and therefore, memory by @oesteban in https://github.com/nipreps/mriqc/pull/1325
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* FIX: Resolve numeric overflow in drift estimation node by @oesteban in https://github.com/nipreps/mriqc/pull/1324
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* FIX: Revise bugfix #1324 by @oesteban in https://github.com/nipreps/mriqc/pull/1327
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* FIX: Remove unreachable code within DWI pipeline by @oesteban in https://github.com/nipreps/mriqc/pull/1328
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* ENH: Allow moving the cache folder with an environment variable by @oesteban in https://github.com/nipreps/mriqc/pull/1285
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* ENH: Flatten multi-echo lists in circumstances that they fail by @oesteban in https://github.com/nipreps/mriqc/pull/1286
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* ENH: Added type hints to config module by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1288
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* ENH: Add test for the CLI parser by @jhlegarreta in https://github.com/nipreps/mriqc/pull/1293
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* ENH: Add CLI entry point test by @jhlegarreta in https://github.com/nipreps/mriqc/pull/1294
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* ENH: Add development dockerfile for testing local changes to repo. by @rwblair in https://github.com/nipreps/mriqc/pull/1299
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* ENH: Crawl dataset's metadata only once and before Nipype's workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1317
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* ENH(dMRI): Deal gracefully with small CC masks by @oesteban in https://github.com/nipreps/mriqc/pull/1311
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* ENH: Leverage new spun-off apply interface by @oesteban in https://github.com/nipreps/mriqc/pull/1313
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* MAINT: Removed personal infromation from maintainers and updated in contributors by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1289
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* MAINT: Add JHLegarreta to contributors list by @jhlegarreta in https://github.com/nipreps/mriqc/pull/1301
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* MAINT: Flexibilize pandas pinned version by @oesteban in https://github.com/nipreps/mriqc/pull/1310
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* MAINT: Remove *Pandas*'s ``FutureWarning`` by @oesteban in https://github.com/nipreps/mriqc/pull/1326
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* DOC: Add description of ``summary_fg`` to the documentation by @celprov in https://github.com/nipreps/mriqc/pull/1306
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* STY: Apply ruff/flake8-implicit-str-concat rule ISC001 by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1296
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* STY: Format *Jupyter notebooks* by @oesteban in https://github.com/nipreps/mriqc/pull/1321
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**Full Changelog**: https://github.com/nipreps/mriqc/compare/24.0.0...24.0.1
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24.0.0 (April 17, 2024)
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=======================
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Initial major release of 2024, featuring the **extraction of IQMs from DWI data**
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for first time in *MRIQC*'s timeline.
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CHANGES
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-------

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