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ATM nib-ls just ignores DICOM files or directories with dicoms, e.g.:
yoh@hopa:/tmp> datalad install -r -g ///dicoms/dartmouth-phantoms/bids_test3
[INFO ] Installing dataset at /tmp/bids_test3 from http://datasets.datalad.org/dicoms/dartmouth-phantoms/bids_test3
[INFO ] Getting 1 items of dataset <Dataset path=/tmp/bids_test3> ...
[INFO ] Actually getting 398 files
1 installed item is available at
<Dataset path=/tmp/bids_test3>
yoh@hopa:/tmp> nib-ls bids_test3/temp000001/AAHead_Scout_MPR_cor/
bids_test3/temp000001/AAHead_Scout_MPR_cor/ failed
*yoh@hopa:/tmp> nib-ls bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713*
bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713464798772101835.dcm failed
bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713464798790801836.dcm failed
bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713464798809401837.dcm failed
bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713502231347001836.dcm failed
bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713502231366801837.dcm failed
bids_test3/temp000001/AAHead_Scout_MPR_cor/1.3.12.2.1107.5.2.43.66112.2016092713502231386101838.dcm failed
and it would be lovely if it output fields making it consistent with nib-ls output for .nii.gz files but also allowing to specify DICOM header fields via -H HEADER_FIELDS
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massich commentedon Jun 15, 2017
can you elaborate?
yarikoptic commentedon Jun 15, 2017
ATM nib-ls just ignores DICOM files or directories with dicoms, e.g.:
and it would be lovely if it output fields making it consistent with nib-ls output for .nii.gz files but also allowing to specify DICOM header fields via
-H HEADER_FIELDS