Making fastq_screen_references value to use baseDir

nkongenelly · nkongenelly · commit fdffe84e4961 · 2025-03-26T14:48:12.000+01:00
diff --git a/nextflow.config b/nextflow.config
@@ -21,7 +21,7 @@ params {
     igenomes_ignore            = false
 
     // Fastqscreen options
-    fastq_screen_references    = './assets/example_fastq_screen_references.csv'
+    fastq_screen_references    = "${baseDir}/assets/example_fastq_screen_references.csv"
 
     // MultiQC options
     multiqc_config             = null
