Merge pull request #6 from nmfs-opensci/delete

update quarto_titlepages to 3.3.10

Author: eeholmes

An-example-tech-memo.tex

@@ -8,7 +8,6 @@
   open=any]{scrbook}
 
 \usepackage{amsmath,amssymb}
-\usepackage{lmodern}
 \usepackage{iftex}
 \ifPDFTeX
   \usepackage[T1]{fontenc}
@@ -19,6 +18,10 @@
   \defaultfontfeatures{Scale=MatchLowercase}
   \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
 \fi
+\usepackage{lmodern}
+\ifPDFTeX\else  
+    % xetex/luatex font selection
+\fi
 % Use upquote if available, for straight quotes in verbatim environments
 \IfFileExists{upquote.sty}{\usepackage{upquote}}{}
 \IfFileExists{microtype.sty}{% use microtype if available
@@ -72,41 +75,45 @@
 \makeatletter
 \def\fps@figure{htbp}
 \makeatother
+% definitions for citeproc citations
+\NewDocumentCommand\citeproctext{}{}
+\NewDocumentCommand\citeproc{mm}{%
+  \begingroup\def\citeproctext{#2}\cite{#1}\endgroup}
+\makeatletter
+ % allow citations to break across lines
+ \let\@cite@ofmt\@firstofone
+ % avoid brackets around text for \cite:
+ \def\@biblabel#1{}
+ \def\@cite#1#2{{#1\if@tempswa , #2\fi}}
+\makeatother
 \newlength{\cslhangindent}
 \setlength{\cslhangindent}{1.5em}
 \newlength{\csllabelwidth}
 \setlength{\csllabelwidth}{3em}
-\newlength{\cslentryspacingunit} % times entry-spacing
-\setlength{\cslentryspacingunit}{\parskip}
-\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing
- {% don't indent paragraphs
-  \setlength{\parindent}{0pt}
+\newenvironment{CSLReferences}[2] % #1 hanging-indent, #2 entry-spacing
+ {\begin{list}{}{%
+  \setlength{\itemindent}{0pt}
+  \setlength{\leftmargin}{0pt}
+  \setlength{\parsep}{0pt}
   % turn on hanging indent if param 1 is 1
   \ifodd #1
-  \let\oldpar\par
-  \def\par{\hangindent=\cslhangindent\oldpar}
+   \setlength{\leftmargin}{\cslhangindent}
+   \setlength{\itemindent}{-1\cslhangindent}
   \fi
   % set entry spacing
-  \setlength{\parskip}{#2\cslentryspacingunit}
- }%
- {}
+  \setlength{\itemsep}{#2\baselineskip}}}
+ {\end{list}}
 \usepackage{calc}
-\newcommand{\CSLBlock}[1]{#1\hfill\break}
-\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}}
-\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break}
+\newcommand{\CSLBlock}[1]{\hfill\break#1\hfill\break}
+\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{\strut#1\strut}}
+\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{\strut#1\strut}}
 \newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
 
-\usepackage{amsmath}
-\usepackage{booktabs}
-\usepackage{caption}
-\usepackage{longtable}
 \usepackage[default]{opensans}
 \fontseries{lc}\selectfont
 \definecolor{nmfsblue1}{HTML}{00467f}
 \definecolor{nmfsblue2}{HTML}{007eb2}
 \makeatletter
-\makeatother
-\makeatletter
 \@ifpackageloaded{bookmark}{}{\usepackage{bookmark}}
 \makeatother
 \makeatletter
@@ -145,16 +152,10 @@
 \newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
 \makeatother
 \makeatletter
-\@ifpackageloaded{caption}{}{\usepackage{caption}}
-\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
-\makeatother
-\makeatletter
-\@ifpackageloaded{tcolorbox}{}{\usepackage[many]{tcolorbox}}
-\makeatother
-\makeatletter
-\@ifundefined{shadecolor}{\definecolor{shadecolor}{rgb}{.97, .97, .97}}
 \makeatother
 \makeatletter
+\@ifpackageloaded{caption}{}{\usepackage{caption}}
+\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
 \makeatother
 
 \usepackage{hyphenat}
@@ -176,7 +177,6 @@
 \usepackage[pagecolor=none]{pagecolor}
 
 
-
 % Set the titlepage font families
 
 
@@ -187,10 +187,6 @@
 
 % Set the coverpage font families
 
-
-
-
-
 \ifLuaTeX
   \usepackage{selnolig}  % disable illegal ligatures
 \fi
@@ -213,7 +209,7 @@
 \subtitle{The subtitle}
 \author{Jane Doe \and Eva Nováková \and Matti Meikäläinen \and Ashok
 Kumar}
-\date{1/1/23}
+\date{2023-01-01}
 
 \begin{document}
 %%%%% begin titlepage extension code
@@ -246,8 +242,7 @@
 \newcommand{\titlelocationbottom}{7in}
 \newcommand{\titlealign}{left}
 
-\begin{scope}
-{%
+\begin{scope}{%
 \fontsize{50}{60.0}\selectfont
 \node[anchor=north
 west, align=left, rotate=0] (Title1) at ($(current page.south west)+(\titlelocationleft,\titlelocationbottom)$)  [text width = 5in]  {\textcolor{nmfsblue1}{\nohyphens{An
@@ -302,6 +297,20 @@
 }
 \end{scope}
 
+% Date
+\newcommand{\datelocationleft}{6in}
+\newcommand{\datelocationbottom}{2in}
+\newcommand{\datelocationalign}{left}
+
+\begin{scope}
+{%
+\fontsize{20}{24.0}\selectfont
+ \node[anchor=north west, align=left, rotate=0] (Date1) at %
+($(current page.south west)+(\datelocationleft,\datelocationbottom)$)  [text width = 2.5in]  {{\nohyphens{January
+2023}}};
+}
+\end{scope}
+
 \end{tikzpicture}
 \clearpage
 \restoregeometry
@@ -343,34 +352,32 @@
 \newcommand{\affiliationstyle}[1]{{#1}}
 
 \newcommand{\titlepageauthorblock}{
-\authorstyle{Jane
-Doe{\textsuperscript{1}}\textsuperscript{,}{\textsuperscript{2}},  Eva
-Nováková{\textsuperscript{2}},  Matti
-Meikäläinen{\textsuperscript{3}}\textsuperscript{,}{\textsuperscript{*}} and Ashok
-Kumar{\textsuperscript{4}}\textsuperscript{,}{\textsuperscript{5}}%
-
-}}
+{\authorstyle{\nohyphens{Jane
+Doe}{\textsuperscript{1}}\textsuperscript{,}{\textsuperscript{2}},  \nohyphens{Eva
+Nováková}{\textsuperscript{2}},  \nohyphens{Matti
+Meikäläinen}{\textsuperscript{3}}\textsuperscript{,}{\textsuperscript{*}} and \nohyphens{Ashok
+Kumar}{\textsuperscript{4}}\textsuperscript{,}{\textsuperscript{5}}}}}
 
 \newcommand{\titlepageaffiliationblock}{
 \hangindent=1em
 \hangafter=1
-\affiliationstyle{
-{1}.~Northwest Fisheries Science Center, Conservation Biology
-Division,  2725 Montlake Boulevard EastSeattle, Washington 98112
-\par\hangindent=1em\hangafter=1%
-{2}.~University of Washington, School of Aquatic and Fisheries Sciences
-\par\hangindent=1em\hangafter=1%
-{3}.~University of Kemijärvi, Department of Biological and Environmental
-Science,  Kylmäniementie 79, 98120, KEMIJÄRVI, Finland
-\par\hangindent=1em\hangafter=1%
-{4}.~University of Minnesota, Department of Mathematics
-\par\hangindent=1em\hangafter=1%
-{5}.~HØnefoss Institute,  R Tradição 35, Portugal 2950-726
+{\affiliationstyle{
+{1}.~Northwest Fisheries Science Center,~Conservation Biology
+Division,~2725 Montlake Boulevard EastSeattle, Washington 98112
+\par\hangindent=1em\hangafter=1{2}.~University of Washington,~School of
+Aquatic and Fisheries Sciences
+\par\hangindent=1em\hangafter=1{3}.~University of Kemijärvi,~Department
+of Biological and Environmental Science,~Kylmäniementie 79, 98120,
+KEMIJÄRVI, Finland
+\par\hangindent=1em\hangafter=1{4}.~University of Minnesota,~Department
+of Mathematics
+\par\hangindent=1em\hangafter=1{5}.~HØnefoss Institute,~R Tradição 35,
+Portugal 2950-726
 
 
 \vspace{1\baselineskip} 
 * \textit{Correspondence:}~Matti Meikälä[email protected]
-}
+}}
 }
 \newcommand{\headerstyled}{%
 {}
@@ -379,7 +386,7 @@
 {}
 }
 \newcommand{\datestyled}{%
-{1/1/23}
+{2023-01-01}
 }
 
 
@@ -483,8 +490,7 @@
 \setcounter{page}{1}
 \end{frontmatter}
 
-%%%%% end titlepage extension code\ifdefined\Shaded\renewenvironment{Shaded}{\begin{tcolorbox}[frame hidden, borderline west={3pt}{0pt}{shadecolor}, enhanced, breakable, sharp corners, interior hidden, boxrule=0pt]}{\end{tcolorbox}}\fi
-
+%%%%% end titlepage extension code
 \renewcommand*\contentsname{Table of contents}
 {
 \setcounter{tocdepth}{1}
@@ -495,8 +501,7 @@
 \mainmatter
 \bookmarksetup{startatroot}
 
-\hypertarget{citation}{%
-\chapter*{Citation}\label{citation}}
+\chapter*{Citation}\label{citation}
 \addcontentsline{toc}{chapter}{Citation}
 
 \markboth{Citation}{Citation}
@@ -506,8 +511,11 @@ \chapter*{Citation}\label{citation}}
 
 \bookmarksetup{startatroot}
 
-\hypertarget{a-chapter}{%
-\chapter{A chapter}\label{a-chapter}}
+\chapter{A chapter}\label{a-chapter}
+
+\bookmarksetup{startatroot}
+
+\chapter{Columbia River Chum}\label{columbia-river-chum}
 
 Lorem ipsum dolor sit amet, consectetur adipiscing elit. Clark (1993)
 vitae ante quis dui egestas fringilla ac vitae justo (Ansley and Davis
@@ -530,8 +538,7 @@ \chapter{A chapter}\label{a-chapter}}
 bibendum. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Fusce
 viverra nulla elementum libero mollis, quis cursus velit sagittis.
 
-\hypertarget{general-location}{%
-\section{General location}\label{general-location}}
+\section{General location}\label{general-location}
 
 Morbi iaculis eget augue eget facilisis. Etiam non orci dignissim,
 efficitur purus viverra, pellentesque neque. Aliquam ornare, magna ut
@@ -540,18 +547,19 @@ \section{General location}\label{general-location}}
 
 \begin{figure}
 
-{\centering \includegraphics[width=4.48in,height=\textheight]{text/../images/fig-map.png}
+\centering{
+
+\includegraphics[width=4.48in,height=\textheight]{text/../images/fig-map.png}
 
 }
 
 \caption{\label{fig-map}Morbi iaculis eget augue eget facilisis. Etiam
 non orci dignissim, efficitur purus viverra, pellentesque neque. Aliquam
 ornare, magna ut dictum mollis.}
 
-\end{figure}
+\end{figure}%
 
-\hypertarget{recent-trends}{%
-\section{Recent trends}\label{recent-trends}}
+\section{Recent trends}\label{recent-trends}
 
 Lorem ipsum dolor sit amet, consectetur adipiscing elit. Donec vitae
 ante quis dui egestas fringilla ac vitae justo. Pellentesque quis magna
@@ -575,28 +583,32 @@ \section{Recent trends}\label{recent-trends}}
 
 \begin{figure}
 
-{\centering \includegraphics{text/Chapter1_files/figure-pdf/fig-CRchum-status-1.pdf}
+\centering{
+
+\includegraphics{text/Chapter1_files/figure-pdf/fig-CRchum-status-1.pdf}
 
 }
 
 \caption{\label{fig-CRchum-status}Columbia River Chum. Log spawner count
 trends.}
 
-\end{figure}
+\end{figure}%
 
-\hypertarget{population-raw-data}{%
-\section{Population raw data}\label{population-raw-data}}
+\section{Population raw data}\label{population-raw-data}
 
 The raw data can be found in Table~\ref{tbl-CRchum-rawdata}. Nunc quis
 euismod felis. Vestibulum gravida nisi mi, quis mollis velit ullamcorper
 non. Aliquam tempus fringilla bibendum. Lorem ipsum dolor sit amet,
 consectetur adipiscing elit. Fusce viverra nulla elementum libero
 mollis, quis cursus velit sagittis.
 
-\hypertarget{tbl-CRchum-rawdata}{}
-\begin{longtable}{rr}
-\caption{\label{tbl-CRchum-rawdata}Columbia River Chum. Raw Data. }\tabularnewline
+\begin{table}
+
+\caption{\label{tbl-CRchum-rawdata}Columbia River Chum. Raw Data.}
 
+\centering{
+
+\begin{longtable*}{rr}
 \toprule
 YEAR & NUMBER\_OF\_SPAWNERS \\ 
 \midrule
@@ -635,12 +647,17 @@ \section{Population raw data}\label{population-raw-data}}
 2014 & 4792 \\ 
 2015 & 11580 \\ 
 \bottomrule
-\end{longtable}
+\end{longtable*}
+
+}
+
+\end{table}%
 
 \bookmarksetup{startatroot}
 
-\hypertarget{conclusion}{%
-\chapter{Conclusion}\label{conclusion}}
+\chapter{Conclusion}\label{conclusion}
+
+\section{First off}\label{first-off}
 
 We want to reference the Interior Columbia Upper Columbia Entiat
 population Table~\ref{tbl-CRchum-rawdata}. It is in Lorem ipsum dolor
@@ -690,38 +707,37 @@ \chapter{Conclusion}\label{conclusion}}
 
 \bookmarksetup{startatroot}
 
-\hypertarget{references}{%
-\chapter*{References}\label{references}}
+\chapter*{References}\label{references}
 \addcontentsline{toc}{chapter}{References}
 
 \markboth{References}{References}
 
-\hypertarget{refs}{}
+\phantomsection\label{refs}
 \begin{CSLReferences}{1}{0}
-\leavevmode\vadjust pre{\hypertarget{ref-ansley1981}{}}%
+\bibitem[\citeproctext]{ref-ansley1981}
 Ansley, H. L. H., and C. D. Davis. 1981. {``Migration and Standing Stock
 of Fishes Associated with Artificial and Natural Reefs on Georgia{'}s
 Outer Continental Shelf.''} Brunswick, Georgia, USA.
 
-\leavevmode\vadjust pre{\hypertarget{ref-clark1993}{}}%
+\bibitem[\citeproctext]{ref-clark1993}
 Clark, W. G. 1993. {``The Effect of Recruitment Variability on the
 Choice of a Target Level of Spawning Biomass Per Recruit.''} In, 233246.
 Alaska Sea Grant College Program
 AK{\textendash}SG{\textendash}93{\textendash}02.
 
-\leavevmode\vadjust pre{\hypertarget{ref-collins1996}{}}%
+\bibitem[\citeproctext]{ref-collins1996}
 Collins, M. R., S. B. Van Sant, D. J. Schmidt, and G. R. Sedberry. 1996.
 {``Age Validation, Movements, and Growth Rates of Tagged Gag
 (Mycteroperca Microlepis), Black Sea Bass (Centropristis Striata) and
 Red Porgy (Pagrus Pagrus).''} In, edited by F. Arrequin-Sanchez, J. L.
 Munro, M. C. Balgos, and D. Pauly, 161--65. Makati City, Philippines:
 ICLARM (International Center for Living Aquatic Resources Management).
 
-\leavevmode\vadjust pre{\hypertarget{ref-deuel1968}{}}%
+\bibitem[\citeproctext]{ref-deuel1968}
 Deuel, D. G., and J. R. Clark. 1968. {``The 1965 Salt-Water Angling
 Survey.''}
 
-\leavevmode\vadjust pre{\hypertarget{ref-hardy1978}{}}%
+\bibitem[\citeproctext]{ref-hardy1978}
 Hardy, J. D., Jr. 1978. {``Development of Fishes of the Mid-Atlantic
 Bight. Vol. III. Aphredoderidae Through Rachycentridae.''}