trouble with installation #12
Description
I'm excited to try the new release with some data that are grouped by site habitat, but I keep getting a non-zero exit status warning when I use devtools to install zoid from github. It looks like there might be an error in the code for model_dirichregmod? Or maybe I need to try updating another package / R permissions on my desktop first? I'm in R version 4.1.3 (2022-03-10). Thanks for the help!
> devtools::install_github("noaa-nwfsc/zoid")
The downloaded source packages are in
‘C:\Users\mfisher5\AppData\Local\Temp\RtmpOErnoU\downloaded_packages’
-- R CMD build ------------------------------------------------------------------------------------------------------------------------
v checking for file 'C:\Users\mfisher5\AppData\Local\Temp\RtmpOErnoU\remotes2ae820826225\noaa-nwfsc-zoid-c82b045/DESCRIPTION' ...
- preparing 'zoid': (714ms)
v checking DESCRIPTION meta-information ...
- cleaning src
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- building 'zoid_1.3.1.tar.gz'
Warning: file 'zoid/configure' did not have execute permissions: corrected
* installing *source* package 'zoid' ...
** using staged installation
SYNTAX ERROR, MESSAGE(S) FROM PARSER:
error in 'model_dirichregmod' at line 7, column 2
-------------------------------------------------
5: int N_covar; // number of covariates in design matrix X
6: matrix[N_samples, N_covar] design_X;
7: array[N_bins,N_bins-1] int prod_idx;
^
8: int overdisp; // whether or not to include overdispersion term
-------------------------------------------------
PARSER EXPECTED: <one of the following:
a variable declaration, beginning with type,
(int, real, vector, row_vector, matrix, unit_vector,
simplex, ordered, positive_ordered,
corr_matrix, cov_matrix,
cholesky_corr, cholesky_cov
or '}' to close variable declarations>
Error in rstan::stanc(file_name, allow_undefined = TRUE, obfuscate_model_name = FALSE, :
failed to parse Stan model 'dirichregmod' due to the above error.
Calls: <Anonymous> -> sapply -> lapply -> FUN -> <Anonymous>
Execution halted
ERROR: configuration failed for package 'zoid'
* removing 'C:/Users/mfisher5/Documents/R/R-4.1.3/library/zoid'
* restoring previous 'C:/Users/mfisher5/Documents/R/R-4.1.3/library/zoid'
Warning message:
In i.p(...) :
installation of package ‘C:/Users/mfisher5/AppData/Local/Temp/RtmpOErnoU/file2ae8f3c3fa4/zoid_1.3.1.tar.gz’ had non-zero exit status