lab-book/index.Rmd at master · noam-g/lab-book · GitHub

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---
title: "Tirosh Lab Book"
date: "Last updated on `r Sys.Date()`"
site: bookdown::bookdown_site
output: bookdown::gitbook
documentclass: book
bibliography: [book.bib, packages.bib]
biblio-style: apalike
link-citations: yes
github-repo: tiroshlab/lab-book
description: "Help & guidelines for members of the Tirosh lab"
---

# Homepage

## Links

### Useful
- [Dropbox home](https://www.dropbox.com/home/Tirosh%20Lab)
- [Lab publications](http://www.weizmann.ac.il/mcb/tirosh/publications-0)
- [Lab website](http://www.weizmann.ac.il/mcb/tirosh/)
- [Experimental protocols](https://www.dropbox.com/sh/javjoi26i5k5f6t/AADAX4RgSZUFuBwtS6TRE3wua?dl=0)

### Fun
- [Lab Twitter](https://twitter.com/tiroshlab)
- [Birthdays](https://www.dropbox.com/s/zwss5fg9rkoz7pp/lab%20bday%20list.xlsx?dl=0)
- [Lab members](http://www.weizmann.ac.il/mcb/tirosh/group-members)
- [Lab trip photos](http://www.weizmann.ac.il/mcb/tirosh/pictures)

## Adding to the book
Adding to the lab book is easy. The only requirement is that you [make a Github account](https://github.com/join?source=header-home), which shouldn't take more than a couple of minutes to do.

Note that since the book is re-built with each edit made, **you may have to wait a few minutes before your changes become visible**.

### Option 1
1. Go to the website chapter that you would like to edit.
    + E.g. [Chapter 3 Lab members and contact details](https://tiroshlab.github.io/lab-book/contact.html)
2. Click on the edit icon at the top of the website page.
3. Make your edits and submit them (green button at the bottom of the page).

### Option 2
**Note**: this will only work for those whose Github users have been added to the book repository.

1. Go to your local clone of the repository.
    + to clone the repository: `git clone https://github.com/tiroshlab/lab-book.git`
2. Make and save the relevant changes to the .Rmd file in question.
    + There is one .Rmd file per chapter.
3. Submit the edit. In the terminal type:
    + `git commit -am <myShortMessage>`
    + `git pull origin master`
    + `git push origin master`

## Book formats
The default book is a [website](https://tiroshlab.github.io/lab-book). You can also choose to download the book as PDF or ebook. To do this, click the download icon at the top of the website page.

```{r include=FALSE}
# automatically create a bib database for R packages
knitr::write_bib(c(
  .packages(), 'bookdown', 'knitr', 'rmarkdown'
), 'packages.bib')
```