Update version and changelog #22
Workflow file for this run
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| name: Build and Test | |
| on: push | |
| concurrency: | |
| group: "${{ github.ref }}" | |
| cancel-in-progress: true | |
| env: | |
| NDIP_DOCKER_REPOSITORY: "${{ secrets.NDIP_DOCKER_REPOSITORY }}" | |
| READTHEDOCS_WEBHOOK_URL: "${{ secrets.READTHEDOCS_WEBHOOK_URL }}" | |
| READTHEDOCS_WEBHOOK_SECRET: "${{ secrets.READTHEDOCS_WEBHOOK_SECRET }}" | |
| GALAXY_URL: "${{ secrets.GALAXY_URL }}" | |
| GALAXY_KEY: "${{ secrets.GALAXY_KEY }}" | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| env: | |
| GIT_STRATEGY: clone | |
| IMAGE_NAME: "${NDIP_DOCKER_REPOSITORY}/${{ github.repository }}" | |
| steps: | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 20 | |
| lfs: true | |
| - name: Build | |
| uses: docker/build-push-action@v6 | |
| id: build | |
| with: | |
| file: dockerfiles/Dockerfile | |
| load: true | |
| - name: Run ruff check | |
| run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff check | |
| - name: Run format check | |
| run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff format --check | |
| - name: Run mypy | |
| run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run mypy . | |
| - name: Unit tests | |
| run: docker run -e NOVA_GALAXY_TEST_GALAXY_KEY=${{ env.GALAXY_KEY }} -e NOVA_GALAXY_TEST_GALAXY_URL=${{ env.GALAXY_URL }} --rm ${{ steps.build.outputs.imageid }} poetry run pytest | |
| - name: Run coverage | |
| run: docker run -e NOVA_GALAXY_TEST_GALAXY_KEY=${{ env.GALAXY_KEY }} -e NOVA_GALAXY_TEST_GALAXY_URL=${{ env.GALAXY_URL }} --rm ${{ steps.build.outputs.imageid }} sh -c "poetry run coverage run && poetry run coverage report" | |
| - name: Docs test | |
| run: docker run --rm ${{ steps.build.outputs.imageid }} bash build_docs.sh |