Julia Dependency Update (#91) #378
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| name: CI with dynamic parallel matrix | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| NBCACHE: ".cache" | |
| JULIA_CONDAPKG_BACKEND: 'Null' | |
| JULIA_CONDAPKG_OFFLINE: 'true' | |
| JULIA_CPU_TARGET: 'generic;icelake-server,clone_all;znver3,clone_all' | |
| JULIA_CI: 'true' | |
| JULIA_NUM_THREADS: 'auto' | |
| TIMEOUT: '600' | |
| ALLOWERRORS: 'false' | |
| PY_VER: '3.13' | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| hash: ${{ steps.hash.outputs.value }} | |
| ver: ${{ steps.julia-version.outputs.resolved }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v6 | |
| - name: Setup Python | |
| uses: actions/setup-python@v6 | |
| id: setup-python | |
| with: | |
| python-version: ${{ env.PY_VER }} | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Install Python dependencies | |
| run: uv pip install --system -r requirements.txt | |
| - name: Read Julia version | |
| id: julia-version | |
| run: python -c 'import tomllib; from pathlib import Path; print("resolved=", tomllib.loads(Path("Manifest.toml").read_text())["julia_version"], sep="")' >> "$GITHUB_OUTPUT" | |
| - name: Get environment hash | |
| id: hash | |
| run: | | |
| echo "value=${{ hashFiles('Project.toml', 'Manifest.toml', 'src/**') }}" >> "$GITHUB_OUTPUT" | |
| echo "ver=${{ runner.os }}-julia-${{ steps.julia-version.outputs.resolved }}" >> "$GITHUB_OUTPUT" | |
| - name: Cache Julia packages | |
| uses: actions/cache@v5 | |
| id: cache-julia | |
| with: | |
| path: ~/.julia | |
| key: ${{ runner.os }}-julia-${{ steps.julia-version.outputs.resolved }}-${{ steps.hash.outputs.value }} | |
| restore-keys: | | |
| ${{ runner.os }}-julia-${{ steps.julia-version.outputs.resolved }}- | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v2 | |
| if: ${{ steps.cache-julia.outputs.cache-hit != 'true' }} | |
| with: | |
| version: ${{ steps.julia-version.outputs.resolved }} | |
| arch: ${{ runner.arch }} | |
| - name: Install Julia packages | |
| if: ${{ steps.cache-julia.outputs.cache-hit != 'true' }} | |
| shell: julia --color=yes {0} | |
| run: | | |
| using Pkg, Dates | |
| Pkg.add(["IJulia", "JSON"]) | |
| Pkg.activate(".") | |
| Pkg.instantiate() | |
| Pkg.precompile() | |
| if ENV["RUNNER_ENVIRONMENT"] == "github-hosted" | |
| Pkg.gc(;collect_delay=Day(0)) | |
| end | |
| - name: List notebooks as a JSON array | |
| id: set-matrix | |
| run: echo "matrix=$(python -c 'import glob, json; print(json.dumps(glob.glob("**/*.ipynb", root_dir="docs", recursive=True)))')" >> "$GITHUB_OUTPUT" | |
| execute: | |
| needs: setup | |
| strategy: | |
| max-parallel: 10 | |
| fail-fast: false | |
| matrix: | |
| notebook: ${{ fromJSON(needs.setup.outputs.matrix) }} | |
| runs-on: ubuntu-latest | |
| env: | |
| NB: docs/${{ matrix.notebook }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v6 | |
| - name: Cache notebook | |
| uses: actions/cache@v5 | |
| id: nb-cache | |
| with: | |
| path: ${{ env.NBCACHE }} | |
| key: notebook-${{ needs.setup.outputs.hash }}-${{ hashFiles(env.NB) }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v6 | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| id: setup-python | |
| with: | |
| python-version: ${{ env.PY_VER }} | |
| - name: Install the latest version of uv | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Install Python dependencies | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| run: uv pip install --system -r requirements.txt | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v2 | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| with: | |
| version: ${{ needs.setup.outputs.ver }} | |
| arch: ${{ runner.arch }} | |
| - name: Restore Julia packages | |
| uses: actions/cache/restore@v5 | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| with: | |
| path: ~/.julia | |
| key: ${{ runner.os }}-julia-${{ needs.setup.outputs.ver }}-${{ needs.setup.outputs.hash }} | |
| - name: Execute notebook | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| run: julia --project=@. .github/ci.jl | |
| - name: Convert artifact Name | |
| id: art | |
| run: echo "name=$(echo ${{ env.NB }} | sed 's/\//-/g')" >> "$GITHUB_OUTPUT" | |
| - name: Upload Notebook | |
| uses: actions/upload-artifact@v6 | |
| with: | |
| name: notebook-${{ steps.art.outputs.name }}-${{ needs.setup.outputs.hash }}-${{ hashFiles(env.NB) }} | |
| path: ${{ env.NBCACHE }} | |
| include-hidden-files: true | |
| retention-days: 1 | |
| render: | |
| needs: execute | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v6 | |
| - name: Download notebooks | |
| uses: actions/download-artifact@v7 | |
| with: | |
| path: ${{ env.NBCACHE }}/ | |
| pattern: notebook-* | |
| merge-multiple: true | |
| - name: Copy back built notebooks | |
| run: cp --verbose -rf ${{ env.NBCACHE }}/docs/* docs/ | |
| - name: Setup Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Render Quarto Project | |
| run: quarto render docs --to html | |
| - name: Upload artifact for GH pages | |
| uses: actions/upload-pages-artifact@v4 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| path: docs/_site/ | |
| # CI conclusion for GitHub status check | |
| # Adaped from https://brunoscheufler.com/blog/2022-04-09-the-required-github-status-check-that-wasnt | |
| CI: | |
| needs: render | |
| if: always() | |
| runs-on: ubuntu-slim | |
| steps: | |
| - run: | | |
| if [[ ${{ needs.render.result }} == "success" ]]; then | |
| echo "Tests passed" | |
| exit 0 | |
| else | |
| echo "Tests failed" | |
| exit 1 | |
| fi | |
| # Deployment job | |
| deploy: | |
| name: Deploy to GitHub pages | |
| needs: render | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-slim | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |