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Julia Dependency Update (#346) #747
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| LITERATE_PROC: '2' | |
| JULIA_NUM_THREADS: '2' | |
| NBCACHE: '.cache' | |
| JULIA_CONDAPKG_BACKEND: 'Null' | |
| JULIA_CONDAPKG_OFFLINE: 'true' | |
| JULIA_CI: 'true' | |
| UV_SYSTEM_PYTHON: 1 | |
| jobs: | |
| CI: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v5 | |
| - name: Setup Python | |
| uses: actions/setup-python@v6 | |
| id: setup-python | |
| with: | |
| python-version: '3.13' | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Install Python dependencies | |
| run: uv pip install -r requirements.txt | |
| - name: Read Julia version | |
| id: julia-version | |
| run: python -c 'import tomllib; from pathlib import Path; print("resolved=", tomllib.loads(Path("Manifest.toml").read_text())["julia_version"], sep="")' >> "$GITHUB_OUTPUT" | |
| - name: Get environment hash | |
| id: hash | |
| run: | | |
| echo "value=${{ hashFiles('Project.toml', 'Manifest.toml', 'src/**') }}" >> "$GITHUB_OUTPUT" | |
| echo "ver=${{ runner.os }}-julia-${{ steps.julia-version.outputs.resolved }}" >> "$GITHUB_OUTPUT" | |
| - name: Cache executed notebooks | |
| uses: actions/cache@v4 | |
| id: cache-nb | |
| with: | |
| path: | | |
| ${{ env.NBCACHE }}/**/*.ipynb | |
| ${{ env.NBCACHE }}/**/*.sha | |
| key: notebook-${{ steps.hash.outputs.value }}-${{ hashFiles('docs/**/*.ipynb', 'docs/**/*.jl') }} | |
| restore-keys: | | |
| notebook-${{ steps.hash.outputs.value }}- | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ steps.julia-version.outputs.resolved }} | |
| - name: Restore Julia packages | |
| uses: actions/cache/restore@v4 | |
| if: ${{ runner.environment == 'github-hosted' }} | |
| id: cache-julia | |
| with: | |
| path: ~/.julia | |
| key: ${{ steps.hash.outputs.ver }}-${{ steps.hash.outputs.value }} | |
| restore-keys: | | |
| ${{ steps.hash.outputs.ver }}- | |
| - name: Install Julia packages | |
| if: ${{ runner.environment == 'self-hosted' || steps.cache-julia.outputs.cache-hit != 'true' }} | |
| shell: julia --color=yes {0} | |
| run: | | |
| using Pkg | |
| Pkg.add(["Literate", "JSON", "Tables", "MarkdownTables", "SHA"]) | |
| Pkg.activate(".") | |
| Pkg.instantiate() | |
| Pkg.precompile() | |
| - name: Clean Julia package directory | |
| if: ${{ runner.environment == 'github-hosted' && steps.cache-julia.outputs.cache-hit != 'true' }} | |
| shell: julia --color=yes {0} | |
| run: | | |
| using Pkg, Dates | |
| Pkg.gc(collect_delay=Day(0)) | |
| - name: Save Julia packages | |
| uses: actions/cache/save@v4 | |
| if: ${{ runner.environment == 'github-hosted' && steps.cache-julia.outputs.cache-hit != 'true' }} | |
| with: | |
| path: ~/.julia | |
| key: ${{ steps.cache-julia.outputs.cache-primary-key }} | |
| - name: Run notebooks | |
| if: ${{ steps.cache-nb.outputs.cache-hit != 'true' }} | |
| run: julia --project=@. --color=yes -p ${{ env.LITERATE_PROC }} .github/ci.jl | |
| - name: Copy back built notebooks | |
| run: cp --verbose -rf ${{ env.NBCACHE }}/docs/* docs/ | |
| - name: Build website | |
| run: uvx jupyter-book build docs/ | |
| - name: Upload pages artifact | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| uses: actions/upload-pages-artifact@v4 | |
| with: | |
| path: docs/_build/html/ | |
| # Notebook branch | |
| notebook: | |
| name: Deploy notebook branch | |
| needs: CI | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| permissions: | |
| contents: write | |
| packages: write | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v5 | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v2 | |
| - name: Convert literate files to Jupyter notebooks | |
| shell: julia --color=yes {0} | |
| working-directory: docs | |
| run: | | |
| import Pkg | |
| Pkg.add("Literate") | |
| using Literate | |
| for (root, dirs, files) in walkdir(pwd()) | |
| for file in files | |
| if endswith(file, ".jl") | |
| nb = joinpath(root, file) | |
| Literate.notebook(nb, dirname(nb); mdstrings=true, execute=false) | |
| end | |
| end | |
| end | |
| # - name: repo2docker | |
| # uses: jupyterhub/repo2docker-action@master | |
| # with: | |
| # DOCKER_USERNAME: ${{ github.repository_owner }} | |
| # DOCKER_PASSWORD: ${{ secrets.GITHUB_TOKEN }} | |
| # DOCKER_REGISTRY: "ghcr.io" | |
| # IMAGE_NAME: ${{ github.repository }} | |
| # LATEST_TAG_OFF: true | |
| # ADDITIONAL_TAG: binder | |
| # PUBLIC_REGISTRY_CHECK: true | |
| # NO_PUSH: false | |
| # - name: Add docker image path | |
| # run: | | |
| # mkdir binder | |
| # echo "FROM ghcr.io/${{ github.repository }}:binder" > binder/Dockerfile | |
| - name: Deploy pages | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| folder: . | |
| branch: ipynb | |
| commit-message: ${{ github.event.head_commit.message }} | |
| # Deployment job | |
| deploy: | |
| name: Deploy to GitHub pages | |
| needs: CI | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| actions: read # to download an artifact uploaded by `actions/upload-pages-artifact@v3` | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |