Lancet2/mkdocs.yml at main · nygenome/Lancet2 · GitHub

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site_name: Lancet2
site_url: https://nygenome.github.io/Lancet2/
site_author: Rajeeva Lochan Musunuri
repo_url: https://github.com/nygenome/Lancet2
repo_name: nygenome/Lancet2
theme:
  name: material
  custom_dir: docs/overrides
  logo: assets/logo_nygenome.svg
  favicon: assets/favicon.ico
  font:
    text: Roboto
    code: Roboto Mono
  features:
    - content.code.copy
    - navigation.top
    - navigation.tabs
    - navigation.instant
    - navigation.instant.prefetch
    - navigation.instant.progress
  palette:
    - media: "(prefers-color-scheme)"
      toggle:
        icon: material/link
        name: Switch to light mode
    - media: "(prefers-color-scheme: light)"
      scheme: default
      primary: indigo
      accent: indigo
      toggle:
        icon: material/toggle-switch
        name: Switch to dark mode
    - media: "(prefers-color-scheme: dark)"
      scheme: slate
      primary: black
      accent: indigo
      toggle:
        icon: material/toggle-switch-off
        name: Switch to system preference
extra:
  version:
    provider: mike
plugins:
  - privacy
  - offline
  - meta
  - blog
  - mike:
      alias_type: symlink
      canonical_version: latest
  - minify:
      minify_html: true
      minify_js: true
      minify_css: true
  - search:
      lang: en
  - git-revision-date-localized:
      type: datetime
      fallback_to_build_date: true
markdown_extensions:
  - abbr
  - admonition
  - attr_list
  - def_list
  - footnotes
  - md_in_html
  - toc:
      permalink: true
  - pymdownx.arithmatex:
      generic: true
  - pymdownx.betterem:
      smart_enable: all
  - pymdownx.caret
  - pymdownx.details
  - pymdownx.highlight:
      anchor_linenums: true
      line_spans: __span
      pygments_lang_class: true
  - pymdownx.inlinehilite
  - pymdownx.keys
  - pymdownx.magiclink:
      normalize_issue_symbols: true
      repo_url_shorthand: true
      user: nygenome
      repo: Lancet2
  - pymdownx.mark
  - pymdownx.smartsymbols
  - pymdownx.tasklist:
      custom_checkbox: true
  - pymdownx.tilde
nav:
  - Getting Started: index.md
  - Guides:
    - Scoring Somatic Variants: guides/scoring_somatic_variants.md
    - Whole Genome Analysis: guides/wgs_analysis.md
    - Targeted Analysis: guides/targeted_analysis.md
    - Custom Visualization: guides/custom_visualization.md
  - Reference: reference.md
  - Publications: publications.md