Merge branch 'master' into set_up_AI_agent

Author: ar-ibrahim

src/ontology/imports/merged_import.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2025-09-04/imports/merged_import.owl>
-Annotation(owl:versionInfo "2025-09-04")
+<http://purl.obolibrary.org/obo/oba/releases/2025-09-26/imports/merged_import.owl>
+Annotation(owl:versionInfo "2025-09-26")
 
 Declaration(Class(<http://identifiers.org/ensembl/ENSG00000006128>))
 Declaration(Class(<http://identifiers.org/ensembl/ENSG00000038945>))
@@ -25133,6 +25133,16 @@ Declaration(Class(<http://purl.obolibrary.org/obo/OBA_1000028>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_1000035>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_1000142>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_1001087>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060180>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060181>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060182>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060184>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060185>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060186>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060187>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060188>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060189>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060190>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000004>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000008>))
@@ -60143,7 +60153,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0004023> "caus
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0002410>)
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0040035>)
 
-# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease causes disruption of)
+# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease disrupts)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0004024> "A relationship between a disease and a process where the disease process disrupts the execution of the process.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0004024> "disease causes disruption of")
@@ -462195,6 +462205,7 @@ DisjointClasses(<http://purl.obolibrary.org/obo/SO_0000110> <http://purl.obolibr
 
 # Class: <http://purl.obolibrary.org/obo/SO_0000185> (primary_transcript)
 
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/SO_0000185> "See \"precursor_RNA\" (SO:0002393) for RNA which may be the result of post-transcriptional processing. If the RNA in question is known not to have been processed, use this class (\"primary_transcript\"). On 9 Sep 2025, Removed \"has_exact_synonym : INSDC_feature:precursor_RNA\" and \"has_exact_synonym : precursor RNA\" from the annotation for this class at the request of Terence Murphy of NCBI. See GitHub Issue #655.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/SO_0000185> "primary_transcript")
 SubClassOf(<http://purl.obolibrary.org/obo/SO_0000185> <http://purl.obolibrary.org/obo/SO_0000673>)