Fix three synonym issues flagged in review

1. Duplicate synonyms: Remove label from exact_synonyms when it duplicates
   the new label (86 rows in entity_attribute_location.tsv, e.g.
   OBA:2040177 'ceramide amount' was listed in its own synonyms)

2. Auto-generated labels: For 6 rows with empty defined_class_name but
   known entity_name + location_name + attribute_name=amount, set explicit
   label (e.g. 'insulin amount in blood') and add level synonym

3. Missing synonym support: Add exact_synonyms data_list_var to
   chemical_role_attribute.yaml and chemical_role_attribute_location.yaml
   patterns, add exact_synonyms column to both TSV files, and populate
   level synonyms for all rows (e.g. 'blood thyroid hormone level' for
   OBA:VT0003351 'blood thyroid hormone amount'; 'thyroid hormone level'
   for auto-generated OBA:1000972)

Agent-Logs-Url: https://github.com/obophenotype/bio-attribute-ontology/sessions/8946373c-0106-42da-b062-f4970fe1292a

Co-authored-by: aleixpuigb <94959119+aleixpuigb@users.noreply.github.com>

Author: Copilot

src/patterns/data/default/chemical_role_attribute.tsv

@@ -1,8 +1,8 @@
-defined_class	defined_class_name	role	role_name	attribute	attribute_name
-OBA:0000079	hormone amounts	CHEBI:24621	hormone	PATO:0000070	amount
-OBA:0000182	nutrient amount	CHEBI:33284	nutrient	PATO:0000070	amount
-OBA:1000972		CHEBI:60311	thyroid hormone	PATO:0000070	amount
-OBA:1000982		CHEBI:33229	vitamin	PATO:0000070	amount
-OBA:1000993		CHEBI:25512	neurotransmitter	PATO:0000070	amount
-OBA:1001004		CHEBI:37845	growth hormone	PATO:0000070	amount
-OBA:1000976		CHEBI:24020	fat-soluble vitamin	PATO:0000070	amount
+defined_class	defined_class_name	role	role_name	attribute	attribute_name	exact_synonyms
+OBA:0000079	hormone amounts	CHEBI:24621	hormone	PATO:0000070	amount	hormone levels
+OBA:0000182	nutrient amount	CHEBI:33284	nutrient	PATO:0000070	amount	nutrient level
+OBA:1000972		CHEBI:60311	thyroid hormone	PATO:0000070	amount	thyroid hormone level
+OBA:1000982		CHEBI:33229	vitamin	PATO:0000070	amount	vitamin level
+OBA:1000993		CHEBI:25512	neurotransmitter	PATO:0000070	amount	neurotransmitter level
+OBA:1001004		CHEBI:37845	growth hormone	PATO:0000070	amount	growth hormone level
+OBA:1000976		CHEBI:24020	fat-soluble vitamin	PATO:0000070	amount	fat-soluble vitamin level

src/patterns/data/default/chemical_role_attribute_location.tsv

@@ -1,11 +1,11 @@
-defined_class	defined_class_name	role	role_name	attribute	attribute_name	location	location_name
-OBA:VT0003351	blood thyroid hormone amount	CHEBI:60311	thyroid hormone	PATO:0000070	amount	UBERON:0000178	blood
-OBA:VT0003369	blood estrogen amount	CHEBI:50114	estrogen	PATO:0000070	amount	UBERON:0000178	blood
-OBA:VT0005120	blood growth hormone amount	CHEBI:37845	growth hormone	PATO:0000070	amount	UBERON:0000178	blood
-OBA:VT0005418	blood hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON:0000178	blood
-OBA:VT0010269	colostrum hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON:0001914	colostrum
-OBA:VT0010275	milk hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON:0001913	milk
-OBA:2050092	serum metabolite amount	CHEBI:25212	metabolite	PATO:0000070	amount	UBERON:0001977	blood serum
-OBA:2050078	blood metabolite amount	CHEBI:25212	metabolite	PATO:0000070	amount	UBERON:0000178	blood
-OBA:2045211	nutrient amount in blood	CHEBI:33284	nutrient	PATO:0000070	amount	UBERON:0000178	blood
-OBA:2050419	endocrine disruptor amount in urine	CHEBI:138015	endocrine disruptor	PATO:0000070	amount	UBERON:0001088	urine
+defined_class	defined_class_name	role	role_name	attribute	attribute_name	location	location_name	exact_synonyms
+OBA:VT0003351	blood thyroid hormone amount	CHEBI:60311	thyroid hormone	PATO:0000070	amount	UBERON:0000178	blood	blood thyroid hormone level
+OBA:VT0003369	blood estrogen amount	CHEBI:50114	estrogen	PATO:0000070	amount	UBERON:0000178	blood	blood estrogen level
+OBA:VT0005120	blood growth hormone amount	CHEBI:37845	growth hormone	PATO:0000070	amount	UBERON:0000178	blood	blood growth hormone level
+OBA:VT0005418	blood hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON:0000178	blood	blood hormone level
+OBA:VT0010269	colostrum hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON:0001914	colostrum	colostrum hormone level
+OBA:VT0010275	milk hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON:0001913	milk	milk hormone level
+OBA:2050092	serum metabolite amount	CHEBI:25212	metabolite	PATO:0000070	amount	UBERON:0001977	blood serum	serum metabolite level
+OBA:2050078	blood metabolite amount	CHEBI:25212	metabolite	PATO:0000070	amount	UBERON:0000178	blood	blood metabolite level
+OBA:2045211	nutrient amount in blood	CHEBI:33284	nutrient	PATO:0000070	amount	UBERON:0000178	blood	nutrient level in blood
+OBA:2050419	endocrine disruptor amount in urine	CHEBI:138015	endocrine disruptor	PATO:0000070	amount	UBERON:0001088	urine	level of endocrine disruptor in urine