Merge pull request #415 from obophenotype/copilot/add-urine-zinc-amount-term

Add urine zinc amount term (OBA:2100002)

Author: aleixpuigb

src/patterns/data/default/entity_attribute_location.tsv

@@ -14403,3 +14403,4 @@ OBA:2081985	level of baculoviral IAP repeat-containing protein 7 (human) in cere
 OBA:2081986	level of semaphorin-6C (human) in cerebrospinal fluid	PR:Q9H3T2	semaphorin-6C (human)	PATO:0000070	amount	UBERON:0001359	cerebrospinal fluid				PMID:39528825	https://orcid.org/0000-0001-6757-4744
 OBA:2081987	level of C-type lectin domain family 11 member A (human) in cerebrospinal fluid	PR:Q9Y240	C-type lectin domain family 11 member A (human)	PATO:0000070	amount	UBERON:0001359	cerebrospinal fluid				PMID:39528825	https://orcid.org/0000-0001-6757-4744
 OBA:2100001	vertebra mineral amount	CHEBI:46662	mineral	PATO:0000070	amount	UBERON:0002412	vertebra	spine bone mineral amount				https://orcid.org/0000-0001-8314-2140	
+OBA:2100002	urine zinc amount	CHEBI:27365	zinc ion	PATO:0000070	amount	UBERON:0001088	urine						

src/patterns/definitions.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2025-11-14/patterns/definitions.owl>
-Annotation(owl:versionInfo "2025-11-14")
+<http://purl.obolibrary.org/obo/oba/releases/2025-12-16/patterns/definitions.owl>
+Annotation(owl:versionInfo "2025-12-16")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10033>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10112>))
@@ -24353,6 +24353,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2090001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2090002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2090003>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2100001>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2100002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_VT0000000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_VT0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_VT0000003>))
@@ -229123,6 +229124,13 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2100001> "vertebra mineral amount")
 EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2100001> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_46662> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0002412>)))))
 
+# Class: <http://purl.obolibrary.org/obo/OBA_2100002> (urine zinc amount)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute_location") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2100002> "The amount of a zinc ion when measured in urine.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute_location") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2100002> "urine zinc ion amount")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2100002> "urine zinc amount")
+EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2100002> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_27365> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001088>)))))
+
 # Class: <http://purl.obolibrary.org/obo/OBA_VT0000000> (mammary gland secreted fluid morphology trait)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "obo:oba/patterns/entity_attribute_part_of") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_VT0000000> "The morphology of a mammary gland fluid/secretion.")