Merge pull request #399 from obophenotype/391_DOSDP_entity_response_quality_in_location

Create DOSDP entity_response_quality_in_location

Author: aleixpuigb

docs/odk-workflows/RepositoryFileStructure.md

@@ -34,7 +34,7 @@ These are the current imports in OBA
 | bfo | http://purl.obolibrary.org/obo/bfo.owl | slme |
 | swisslipids | http://purl.obolibrary.org/obo/swisslipids.owl | slme |
 | lipidmaps | http://purl.obolibrary.org/obo/lipidmaps.owl | slme |
-| NCIT | http://purl.obolibrary.org/obo/ncit/ncit-obo-slim.owl | slme |
+| ncit | https://raw.githubusercontent.com/ncit-obo-org/ncit-obo-edition/refs/heads/main/src/ontology/ncit-obo-slim.owl | slme |
 | obi | http://purl.obolibrary.org/obo/obi.owl | slme |
 ## Components
 Components, in contrast to imports, are considered full members of the ontology. This means that any axiom in a component is also included in the ontology base - which means it is considered _native_ to the ontology. While this sounds complicated, consider this: conceptually, no component should be part of more than one ontology. If that seems to be the case, we are most likely talking about an import. Components are often not needed for ontologies, but there are some use cases:

src/ontology/Makefile

@@ -10,7 +10,7 @@
 # More information: https://github.com/INCATools/ontology-development-kit/
 
 # Fingerprint of the configuration file when this Makefile was last generated
-CONFIG_HASH=                dad4899e88a64ae343570352704633ac3ff6b31c8a29a1c07468b3ed911c3f4f
+CONFIG_HASH=                94c86e053724308c99bae000b4bf10b1681e0d6837f08a132a1e414ccd18775a
 
 
 # ----------------------------------------
@@ -193,7 +193,7 @@ all_main: $(MAIN_FILES)
 # ----------------------------------------
 
 
-IMPORTS =  ro chebi goplus go pato omo hp mondo ncbitaxon uberon cl nbo pr so po bfo swisslipids lipidmaps NCIT obi
+IMPORTS =  ro chebi goplus go pato omo hp mondo ncbitaxon uberon cl nbo pr so po bfo swisslipids lipidmaps ncit obi
 
 IMPORT_ROOTS =  $(IMPORTDIR)/merged_import
 IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl)
@@ -668,11 +668,11 @@ $(MIRRORDIR)/lipidmaps.owl:
 	echo "ERROR: You have configured your default mirror type to be custom; this behavior needs to be overwritten in oba.Makefile!" && false
 
 
-## ONTOLOGY: NCIT
-.PHONY: mirror-NCIT
-.PRECIOUS: $(MIRRORDIR)/NCIT.owl
-mirror-NCIT: | $(TMPDIR)
-	$(ROBOT) remove -I http://purl.obolibrary.org/obo/ncit/ncit-obo-slim.owl --base-iri http://purl.obolibrary.org/obo/NCIT  --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl
+## ONTOLOGY: ncit
+.PHONY: mirror-ncit
+.PRECIOUS: $(MIRRORDIR)/ncit.owl
+mirror-ncit: | $(TMPDIR)
+	$(ROBOT) remove -I https://raw.githubusercontent.com/ncit-obo-org/ncit-obo-edition/refs/heads/main/src/ontology/ncit-obo-slim.owl --base-iri http://purl.obolibrary.org/obo/NCIT  --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl
 
 
 ## ONTOLOGY: obi