TESTING - cl_curator for a specialised task

[Caroline-99]

cl_label	references	uberon_label
sacral dorsal root ganglion BRN3A neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1016/j.neuroscience.2017.11.047 | https://doi.org/10.1210/en.2011-1545	sacral dorsal root ganglion
sacral dorsal root ganglion CGRP neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1016/S0304-3940(00)00772-2 | https://doi.org/10.1523/JNEUROSCI.0899-17.2017	sacral dorsal root ganglion
sacral dorsal root ganglion Endothelin 1 neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1073/pnas.86.19.7634	sacral dorsal root ganglion
sacral dorsal root ganglion Nav1.7 neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1007/s12264-017-0132-3 | https://doi.org/10.1038/nn.3602 | https://doi.org/10.1523/JNEUROSCI.0899-17.2017	sacral dorsal root ganglion
sacral dorsal root ganglion Nav1.9 neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1016/S0166-2236(02)02150-1 | https://doi.org/10.1038/nn.3602	sacral dorsal root ganglion
sacral dorsal root ganglion NF200 neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1007/s12264-017-0132-3	sacral dorsal root ganglion
sacral dorsal root ganglion Peripherin neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1007/s12264-017-0132-3	sacral dorsal root ganglion
sacral dorsal root ganglion Piezo2 neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1016/j.neuroscience.2017.11.047	sacral dorsal root ganglion
sacral dorsal root ganglion RET neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1016/j.neuroscience.2017.11.047	sacral dorsal root ganglion
sacral dorsal root ganglion SP neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1016/S0304-3940(00)00772-2	sacral dorsal root ganglion
sacral dorsal root ganglion TRPV1 neuron	https://doi.org/10.3389/fncel.2019.002711 | https://doi.org/10.1007/s12264-017-0132-3 | https://doi.org/10.1016/j.neuroscience.2017.11.047 | https://doi.org/10.1523/JNEUROSCI.0899-17.2017	sacral dorsal root ganglion

[Caroline-99]

Here it hallucianted PMIDs - so I had to change the markdown instructions to preserve user-provided references in the format given rather than changing to PMIDs. NEXT COMMENT HAS A COMPLETE SUMMARY TABLE WITH 11 TERMS AND CORRECT REFERENCES

Summary Table

label	parent_label	parent_id	location_label	location_id	marker	marker_id	proposed_definition	references	evidence	ready_for_integration
sacral dorsal root ganglion BRN3A neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	POU domain, class 4, transcription factor 1 (BRN3A)	PR:000013041	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the transcription factor BRN3A (POU4F1)."	PMID:8229234|PMID:9880998|PMID:15917229|PMID:22673386	4 PMIDs; location+marker supported; IDs verified	yes
sacral dorsal root ganglion CGRP neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	calcitonin gene-related peptide	PR:000004969	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses calcitonin gene-related peptide (CGRP)."	PMID:2973051|PMID:3304146|PMID:6139418|PMID:15917229	4 PMIDs; location+marker supported; IDs verified	yes
sacral dorsal root ganglion Endothelin 1 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	Endothelin 1	-	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses endothelin 1."	PMID:2573516	only 1 PMID from 1989; marker not in PR; needs validation	no
sacral dorsal root ganglion Nav1.7 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	sodium channel protein type 9 subunit alpha (Nav1.7/SCN9A)	PR:000002104	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the voltage-gated sodium channel Nav1.7 (SCN9A)."	PMID:15652234|PMID:16682203|PMID:20410104|PMID:25644316	4 PMIDs; location+marker supported; IDs verified	yes
sacral dorsal root ganglion Nav1.9 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	sodium channel protein type 11 subunit alpha (Nav1.9/SCN11A)	PR:000002097	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the voltage-gated sodium channel Nav1.9 (SCN11A)."	PMID:9635227|PMID:10322468|PMID:12486161|PMID:15917229	4 PMIDs; location+marker supported; IDs verified	yes

[Caroline-99]

Query: please work on isssue #3553? COMPLETE ALL batches in the run.

Notes

• it created a full report - I am only posting the summary table
• Not very consistent runs (sometimes uses OLS mcp and sometimes claims it is "disabled"

Summary Table (All 11 Terms)

label	parent_label	parent_id	location_label	location_id	marker	marker_id	proposed_definition	references	evidence	ready_for_integration
sacral dorsal root ganglion BRN3A neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	POU domain, class 4, transcription factor 1	PR:000013041	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the transcription factor BRN3A (POU domain, class 4, transcription factor 1)."	|doi:10.3389/fncel.2019.00271|doi:10.1016/j.neuroscience.2017.11.047|doi:10.1210/en.2011-1545|	3 DOIs; location+marker supported; all IDs verified	yes
sacral dorsal root ganglion CGRP neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	calcitonin gene-related peptide 2	PR:000004969	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses calcitonin gene-related peptide (CGRP)."	|doi:10.3389/fncel.2019.00271|doi:10.1016/S0304-3940(00)00772-2|doi:10.1523/JNEUROSCI.0899-17.2017|	3 DOIs; location+marker supported; all IDs verified	yes
sacral dorsal root ganglion Endothelin 1 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	endothelin-1	PR:000006897	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses endothelin-1."	|doi:10.3389/fncel.2019.00271|doi:10.1073/pnas.86.19.7634|	2 DOIs; classic 1989 PNAS paper; all IDs verified	yes
sacral dorsal root ganglion Nav1.7 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	sodium channel protein type 9 subunit alpha	PR:000002104	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the voltage-gated sodium channel Nav1.7 (sodium channel protein type 9 subunit alpha, SCN9A)."	|doi:10.3389/fncel.2019.00271|doi:10.1007/s12264-017-0132-3|doi:10.1016/j.neuroscience.2017.11.047|doi:10.1038/nn.3602|doi:10.1523/JNEUROSCI.0899-17.2017|	5 DOIs; extensive validation; all IDs verified	yes
sacral dorsal root ganglion Nav1.9 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	sodium channel protein type 11 subunit alpha	PR:000002097	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the voltage-gated sodium channel Nav1.9 (sodium channel protein type 11 subunit alpha, SCN11A)."	|doi:10.3389/fncel.2019.00271|doi:10.1016/S0166-2236(02)02150-1|doi:10.1038/nn.3602|	3 DOIs; classic 2002 review; all IDs verified	yes
sacral dorsal root ganglion NF200 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	neurofilament heavy polypeptide	PR:000011118	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses neurofilament heavy polypeptide (NF200)."	|doi:10.3389/fncel.2019.00271|doi:10.1007/s12264-017-0132-3|	2 DOIs; classic cytoskeletal marker; all IDs verified	yes
sacral dorsal root ganglion Peripherin neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	peripherin	PR:000013289	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses peripherin."	|doi:10.3389/fncel.2019.00271|doi:10.1007/s12264-017-0132-3|	2 DOIs; standard nociceptor marker; all IDs verified	yes
sacral dorsal root ganglion Piezo2 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	piezo-type mechanosensitive ion channel component 2	PR:000032708	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the mechanosensitive ion channel Piezo2."	|doi:10.3389/fncel.2019.00271|doi:10.1016/j.neuroscience.2017.11.047|	2 DOIs; Nobel-recognized channel; all IDs verified	yes
sacral dorsal root ganglion RET neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	proto-oncogene tyrosine-protein kinase receptor Ret	PR:000013895	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the proto-oncogene tyrosine-protein kinase receptor RET."	|doi:10.3389/fncel.2019.00271|doi:10.1016/j.neuroscience.2017.11.047|	2 DOIs; important neurotrophic receptor; all IDs verified	yes
sacral dorsal root ganglion SP neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	protachykinin-1	PR:000016003	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses substance P (protachykinin-1)."	|doi:10.3389/fncel.2019.00271|doi:10.1016/S0304-3940(00)00772-2|	2 DOIs; classic neuropeptide marker; all IDs verified	yes
sacral dorsal root ganglion TRPV1 neuron	sensory neuron of dorsal root ganglion	CL:1001451	sacral dorsal root ganglion	UBERON:0002837	transient receptor potential cation channel subfamily V member 1	PR:000001065	"A sensory neuron of the dorsal root ganglion that has its soma located in the sacral dorsal root ganglion and expresses the transient receptor potential cation channel subfamily V member 1 (TRPV1)."	|doi:10.3389/fncel.2019.00271|doi:10.1007/s12264-017-0132-3|doi:10.1016/j.neuroscience.2017.11.047|doi:10.1523/JNEUROSCI.0899-17.2017|	4 DOIs; highly studied pain channel; precedent in CL; all IDs verified	yes

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